RNA–Protein interactions for RNA: ENST00000462787.5

SMC4-204, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 5,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-204ENST00000462787 NISCHQ9Y2I1 1504 aa26.12■■□□□ 1.77
SMC4-204ENST00000462787 DCAF8L2P0C7V8 631 aa25.75■■□□□ 1.71
SMC4-204ENST00000462787 SUPT5HO00267 1087 aaKnown RBP25.71■■□□□ 1.71
SMC4-204ENST00000462787 PELP1Q8IZL8 1130 aaKnown RBP25.33■■□□□ 1.65
SMC4-204ENST00000462787 SHROOM4Q9ULL8 1493 aa25.11■■□□□ 1.61
SMC4-204ENST00000462787 PCGF6Q9BYE7 350 aa24.99■■□□□ 1.59
SMC4-204ENST00000462787 MYT1Q01538 1121 aa24.97■■□□□ 1.59
SMC4-204ENST00000462787 ZEB1P37275 1124 aaPredicted RBP24.8■■□□□ 1.56
SMC4-204ENST00000462787 CENPBP07199 599 aaPredicted RBP24.67■■□□□ 1.54
SMC4-204ENST00000462787 HRCP23327 699 aa24.52■■□□□ 1.52
SMC4-204ENST00000462787 EHMT2Q96KQ7 1210 aa24.4■■□□□ 1.5
SMC4-204ENST00000462787 CCER1Q8TC90 406 aaPredicted RBP24.12■■□□□ 1.45
SMC4-204ENST00000462787 APLP2Q06481 763 aa24.09■■□□□ 1.45
SMC4-204ENST00000462787 FAM9AQ8IZU1 332 aaPredicted RBP24.09■■□□□ 1.45
SMC4-204ENST00000462787 TRIM26Q12899 539 aaPredicted RBP24.06■■□□□ 1.44
SMC4-204ENST00000462787 ERICH6Q7L0X2 663 aa23.95■■□□□ 1.43
SMC4-204ENST00000462787 TRIM41Q8WV44 630 aa23.87■■□□□ 1.41
SMC4-204ENST00000462787 TTBK1Q5TCY1 1321 aaPredicted RBP23.79■■□□□ 1.4
SMC4-204ENST00000462787 PPARGC1BQ86YN6 1023 aaKnown RBP23.76■■□□□ 1.39
SMC4-204ENST00000462787 YTHDC1Q96MU7 727 aaKnown RBP23.74■■□□□ 1.39
SMC4-204ENST00000462787 CHIC1Q5VXU3 224 aa23.65■■□□□ 1.38
SMC4-204ENST00000462787 NEFLP07196 543 aa23.62■■□□□ 1.37
SMC4-204ENST00000462787 LOC105371045A0A1W2PR82 267 aa23.41■■□□□ 1.34
SMC4-204ENST00000462787 UBTFP17480 764 aaKnown RBP23.3■■□□□ 1.32
SMC4-204ENST00000462787 DIEXFQ68CQ4 756 aaKnown RBP23.29■■□□□ 1.32
SMC4-204ENST00000462787 GTF3C3Q9Y5Q9 886 aa23.18■■□□□ 1.3
SMC4-204ENST00000462787 RANGAP1P46060 587 aaPredicted RBP23.09■■□□□ 1.29
SMC4-204ENST00000462787 ACIN1Q9UKV3 1341 aaKnown RBP23.06■■□□□ 1.28
SMC4-204ENST00000462787 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.04■■□□□ 1.28
SMC4-204ENST00000462787 HNRNPUL2Q1KMD3 747 aaKnown RBP22.82■■□□□ 1.24
SMC4-204ENST00000462787 DCAF1Q9Y4B6 1507 aa22.74■■□□□ 1.23
SMC4-204ENST00000462787 ATP1B4Q9UN42 357 aaPredicted RBP22.73■■□□□ 1.23
SMC4-204ENST00000462787 ZNF316A6NFI3 1004 aaPredicted RBP22.73■■□□□ 1.23
SMC4-204ENST00000462787 RTL5Q5HYW3 569 aaPredicted RBP22.67■■□□□ 1.22
SMC4-204ENST00000462787 DAXXQ9UER7 740 aaPredicted RBP22.66■■□□□ 1.22
SMC4-204ENST00000462787 SCAF1Q9H7N4 1312 aaKnown RBP22.64■■□□□ 1.22
SMC4-204ENST00000462787 CLSPNQ9HAW4 1339 aa22.62■■□□□ 1.21
SMC4-204ENST00000462787 ITGAEP38570 1179 aa22.52■■□□□ 1.2
SMC4-204ENST00000462787 NEUROD1Q13562 356 aa22.49■■□□□ 1.19
SMC4-204ENST00000462787 BCANQ96GW7 911 aa22.48■■□□□ 1.19
SMC4-204ENST00000462787 CDK11AQ9UQ88 783 aaPredicted RBP22.43■■□□□ 1.18
SMC4-204ENST00000462787 ANP32CO43423 234 aa22.28■■□□□ 1.16
SMC4-204ENST00000462787 MYT1LQ9UL68 1186 aa22.22■■□□□ 1.15
SMC4-204ENST00000462787 POLR3GLQ9BT43 218 aa22.19■■□□□ 1.14
SMC4-204ENST00000462787 FKBP8Q14318 412 aa22.07■■□□□ 1.12
SMC4-204ENST00000462787 MYO15BQ96JP2 1530 aa22.07■■□□□ 1.12
SMC4-204ENST00000462787 CCDC180Q9P1Z9 1646 aa22.05■■□□□ 1.12
SMC4-204ENST00000462787 ANP32AP39687 249 aaKnown RBP22.02■■□□□ 1.12
SMC4-204ENST00000462787 FAM50AQ14320 339 aaKnown RBP22■■□□□ 1.11
SMC4-204ENST00000462787 CNGB1Q14028 1251 aaPredicted RBP22■■□□□ 1.11
SMC4-204ENST00000462787 ANP32EQ9BTT0 268 aa21.96■■□□□ 1.11
SMC4-204ENST00000462787 MIER1Q8N108 512 aa21.94■■□□□ 1.1
SMC4-204ENST00000462787 CSRNP3Q8WYN3 585 aa21.91■■□□□ 1.1
SMC4-204ENST00000462787 ZCCHC6Q5VYS8 1495 aaKnown RBP21.84■■□□□ 1.09
SMC4-204ENST00000462787 TRIM52Q96A61 297 aa21.77■■□□□ 1.08
SMC4-204ENST00000462787 EIF5BO60841 1220 aaKnown RBP21.71■■□□□ 1.07
SMC4-204ENST00000462787 HNRNPUQ00839 825 aaKnown RBP eCLIP21.68■■□□□ 1.062e-22■■■■■ 68.1
SMC4-204ENST00000462787 DDX10Q13206 875 aaKnown RBP21.68■■□□□ 1.06
SMC4-204ENST00000462787 NPM2Q86SE8 214 aaKnown RBP21.64■■□□□ 1.05
SMC4-204ENST00000462787 GLIPR1L2Q4G1C9 344 aa21.64■■□□□ 1.05
SMC4-204ENST00000462787 ZBTB47Q9UFB7 747 aaPredicted RBP21.63■■□□□ 1.05
SMC4-204ENST00000462787 NBR1Q14596 966 aa21.6■■□□□ 1.05
SMC4-204ENST00000462787 BCL11AQ9H165 835 aa21.57■■□□□ 1.04
SMC4-204ENST00000462787 TONSLQ96HA7 1378 aa21.54■■□□□ 1.04
SMC4-204ENST00000462787 SUPT16HQ9Y5B9 1047 aaKnown RBP21.54■■□□□ 1.04
SMC4-204ENST00000462787 CCDC136Q96JN2 1154 aa21.49■■□□□ 1.03
SMC4-204ENST00000462787 ZNF326Q5BKZ1 582 aaKnown RBP21.46■■□□□ 1.03
SMC4-204ENST00000462787 FAM9BQ8IZU0 186 aa21.42■■□□□ 1.02
SMC4-204ENST00000462787 CANXP27824 592 aaKnown RBP21.36■■□□□ 1.01
SMC4-204ENST00000462787 CEP162Q5TB80 1403 aa21.35■■□□□ 1.01
SMC4-204ENST00000462787 SLC4A1APQ9BWU0 796 aaKnown RBP21.34■■□□□ 1.01
SMC4-204ENST00000462787 IRX6P78412 446 aaPredicted RBP21.34■■□□□ 1.01
SMC4-204ENST00000462787 EEA1Q15075 1411 aa21.31■■□□□ 1
SMC4-204ENST00000462787 ANP32BQ92688 251 aaKnown RBP21.31■■□□□ 1
SMC4-204ENST00000462787 CLIP1P30622 1438 aa21.3■■□□□ 1
SMC4-204ENST00000462787 MRS2Q9HD23 443 aa21.3■■□□□ 1
SMC4-204ENST00000462787 UPF2Q9HAU5 1272 aaKnown RBP21.26■□□□□ 0.99
SMC4-204ENST00000462787 DDRGK1Q96HY6 314 aa21.25■□□□□ 0.99
SMC4-204ENST00000462787 TNIKQ9UKE5 1360 aa21.23■□□□□ 0.99
SMC4-204ENST00000462787 PPP4R2Q9NY27 417 aa21.22■□□□□ 0.99
SMC4-204ENST00000462787 RBM19Q9Y4C8 960 aaKnown RBP21.21■□□□□ 0.99
SMC4-204ENST00000462787 GOLGA3Q08378 1498 aa21.21■□□□□ 0.99
SMC4-204ENST00000462787 SCRIBQ14160 1630 aa21.21■□□□□ 0.99
SMC4-204ENST00000462787 NOP58Q9Y2X3 529 aaKnown RBP21.2■□□□□ 0.99
SMC4-204ENST00000462787 TMC1Q8TDI8 760 aa21.19■□□□□ 0.98
SMC4-204ENST00000462787 PPM1GO15355 546 aaPredicted RBP21.19■□□□□ 0.98
SMC4-204ENST00000462787 P3H3Q8IVL6 736 aa21.19■□□□□ 0.98
SMC4-204ENST00000462787 RSF1Q96T23 1441 aaPredicted RBP21.19■□□□□ 0.98
SMC4-204ENST00000462787 ABCC9O60706 1549 aa21.18■□□□□ 0.98
SMC4-204ENST00000462787 TSHZ2Q9NRE2 1034 aa21.18■□□□□ 0.98
SMC4-204ENST00000462787 PABPN1Q86U42 306 aaKnown RBP eCLIP21.14■□□□□ 0.98
SMC4-204ENST00000462787 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.14■□□□□ 0.98
SMC4-204ENST00000462787 DEKP35659 375 aaKnown RBP21.13■□□□□ 0.97
SMC4-204ENST00000462787 HIRIP3Q9BW71 556 aaPredicted RBP21.12■□□□□ 0.97
SMC4-204ENST00000462787 EIF4G2P78344 907 aaKnown RBP eCLIP21.11■□□□□ 0.97
SMC4-204ENST00000462787 NEFMP07197 916 aa21.1■□□□□ 0.97
SMC4-204ENST00000462787 ERICH6BQ5W0A0 696 aa21.07■□□□□ 0.96
SMC4-204ENST00000462787 HSP90AA1P07900 732 aaKnown RBP21.07■□□□□ 0.96
SMC4-204ENST00000462787 CCER2I3L3R5 266 aa21.05■□□□□ 0.96
SMC4-204ENST00000462787 SALL2Q9Y467 1007 aaPredicted RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms