RNA–Protein interactions for RNA: ENST00000469762.5

SMC4-210, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 3,998 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-210ENST00000469762 NISCHQ9Y2I1 1504 aa20.91■□□□□ 0.94
SMC4-210ENST00000469762 SHROOM4Q9ULL8 1493 aa17.99■□□□□ 0.47
SMC4-210ENST00000469762 CCDC180Q9P1Z9 1646 aa17.79■□□□□ 0.44
SMC4-210ENST00000469762 ZCCHC6Q5VYS8 1495 aaKnown RBP17.75■□□□□ 0.43
SMC4-210ENST00000469762 SUPT5HO00267 1087 aaKnown RBP17.71■□□□□ 0.42
SMC4-210ENST00000469762 MYO15BQ96JP2 1530 aa17.55■□□□□ 0.4
SMC4-210ENST00000469762 CHIC1Q5VXU3 224 aa17.42■□□□□ 0.38
SMC4-210ENST00000469762 HRCP23327 699 aa17.29■□□□□ 0.36
SMC4-210ENST00000469762 DCAF1Q9Y4B6 1507 aa17.13■□□□□ 0.33
SMC4-210ENST00000469762 DCAF8L2P0C7V8 631 aa17.11■□□□□ 0.33
SMC4-210ENST00000469762 PCGF6Q9BYE7 350 aa17.08■□□□□ 0.33
SMC4-210ENST00000469762 PPARGC1BQ86YN6 1023 aaKnown RBP16.98■□□□□ 0.31
SMC4-210ENST00000469762 LOC105371045A0A1W2PR82 267 aa16.94■□□□□ 0.3
SMC4-210ENST00000469762 ABCC9O60706 1549 aa16.8■□□□□ 0.28
SMC4-210ENST00000469762 TRIM26Q12899 539 aaPredicted RBP16.66■□□□□ 0.26
SMC4-210ENST00000469762 RSF1Q96T23 1441 aaPredicted RBP16.66■□□□□ 0.26
SMC4-210ENST00000469762 SCRIBQ14160 1630 aa16.59■□□□□ 0.25
SMC4-210ENST00000469762 RB1CC1Q8TDY2 1594 aa16.57■□□□□ 0.24
SMC4-210ENST00000469762 TRIM41Q8WV44 630 aa16.43■□□□□ 0.22
SMC4-210ENST00000469762 CECR2Q9BXF3 1484 aa16.35■□□□□ 0.21
SMC4-210ENST00000469762 FAM9AQ8IZU1 332 aaPredicted RBP16.35■□□□□ 0.21
SMC4-210ENST00000469762 MROH2BQ7Z745 1585 aa16.31■□□□□ 0.2
SMC4-210ENST00000469762 ZEB1P37275 1124 aaPredicted RBP16.31■□□□□ 0.2
SMC4-210ENST00000469762 UNC13AQ9UPW8 1703 aa16.31■□□□□ 0.2
SMC4-210ENST00000469762 WIZO95785 1651 aa16.25■□□□□ 0.19
SMC4-210ENST00000469762 EHMT2Q96KQ7 1210 aa16.22■□□□□ 0.19
SMC4-210ENST00000469762 NACADO15069 1562 aa16.22■□□□□ 0.19
SMC4-210ENST00000469762 EIF4G1Q04637 1599 aaKnown RBP16.21■□□□□ 0.19
SMC4-210ENST00000469762 SCAF1Q9H7N4 1312 aaKnown RBP16.15■□□□□ 0.18
SMC4-210ENST00000469762 BAZ1AQ9NRL2 1556 aaPredicted RBP16.12■□□□□ 0.17
SMC4-210ENST00000469762 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16■□□□□ 0.15
SMC4-210ENST00000469762 ABCC8Q09428 1581 aa15.97■□□□□ 0.15
SMC4-210ENST00000469762 CCDC88BA6NC98 1476 aa15.96■□□□□ 0.14
SMC4-210ENST00000469762 TOP2AP11388 1531 aaKnown RBP15.92■□□□□ 0.14
SMC4-210ENST00000469762 WRNQ14191 1432 aaPredicted RBP eCLIP15.92■□□□□ 0.14
SMC4-210ENST00000469762 SMARCA2P51531 1590 aa15.9■□□□□ 0.14
SMC4-210ENST00000469762 BICRAQ9NZM4 1560 aa15.88■□□□□ 0.13
SMC4-210ENST00000469762 SMARCA4P51532 1647 aa15.88■□□□□ 0.13
SMC4-210ENST00000469762 PELP1Q8IZL8 1130 aaKnown RBP15.87■□□□□ 0.13
SMC4-210ENST00000469762 CCER1Q8TC90 406 aaPredicted RBP15.87■□□□□ 0.13
SMC4-210ENST00000469762 SOGA1O94964 1423 aa15.86■□□□□ 0.13
SMC4-210ENST00000469762 CEP162Q5TB80 1403 aa15.85■□□□□ 0.13
SMC4-210ENST00000469762 NEUROD1Q13562 356 aa15.85■□□□□ 0.13
SMC4-210ENST00000469762 ACIN1Q9UKV3 1341 aaKnown RBP15.83■□□□□ 0.12
SMC4-210ENST00000469762 RUSC2Q8N2Y8 1516 aa15.82■□□□□ 0.12
SMC4-210ENST00000469762 TNIKQ9UKE5 1360 aa15.78■□□□□ 0.12
SMC4-210ENST00000469762 TTBK1Q5TCY1 1321 aaPredicted RBP15.76■□□□□ 0.11
SMC4-210ENST00000469762 DIEXFQ68CQ4 756 aaKnown RBP15.75■□□□□ 0.11
SMC4-210ENST00000469762 CSRNP3Q8WYN3 585 aa15.68■□□□□ 0.1
SMC4-210ENST00000469762 EEA1Q15075 1411 aa15.68■□□□□ 0.1
SMC4-210ENST00000469762 GTF3C3Q9Y5Q9 886 aa15.65■□□□□ 0.1
SMC4-210ENST00000469762 GOLGA3Q08378 1498 aa15.62■□□□□ 0.09
SMC4-210ENST00000469762 PEG3Q9GZU2 1588 aa15.61■□□□□ 0.09
SMC4-210ENST00000469762 SYNJ1O43426 1573 aa15.59■□□□□ 0.09
SMC4-210ENST00000469762 UBTFP17480 764 aaKnown RBP15.58■□□□□ 0.09
SMC4-210ENST00000469762 ZNF316A6NFI3 1004 aaPredicted RBP15.57■□□□□ 0.08
SMC4-210ENST00000469762 KIF21BO75037 1637 aa15.56■□□□□ 0.08
SMC4-210ENST00000469762 CENPBP07199 599 aaPredicted RBP15.54■□□□□ 0.08
SMC4-210ENST00000469762 CEP164Q9UPV0 1460 aa15.5■□□□□ 0.07
SMC4-210ENST00000469762 CLIP1P30622 1438 aa15.47■□□□□ 0.07
SMC4-210ENST00000469762 PABPN1Q86U42 306 aaKnown RBP eCLIP15.46■□□□□ 0.06
SMC4-210ENST00000469762 MIER1Q8N108 512 aa15.45■□□□□ 0.06
SMC4-210ENST00000469762 VPS8Q8N3P4 1428 aa15.45■□□□□ 0.06
SMC4-210ENST00000469762 HNRNPUL2Q1KMD3 747 aaKnown RBP15.45■□□□□ 0.06
SMC4-210ENST00000469762 RAPGEF2Q9Y4G8 1499 aa15.45■□□□□ 0.06
SMC4-210ENST00000469762 BAZ1BQ9UIG0 1483 aaKnown RBP15.41■□□□□ 0.06
SMC4-210ENST00000469762 ATAD2BQ9ULI0 1458 aa15.39■□□□□ 0.05
SMC4-210ENST00000469762 YTHDC1Q96MU7 727 aaKnown RBP15.38■□□□□ 0.05
SMC4-210ENST00000469762 TOP2BQ02880 1626 aa15.33■□□□□ 0.04
SMC4-210ENST00000469762 BIVM-ERCC5R4GMW8 1640 aa15.29■□□□□ 0.04
SMC4-210ENST00000469762 ARAP1Q96P48 1450 aa15.28■□□□□ 0.04
SMC4-210ENST00000469762 DHX57Q6P158 1386 aaKnown RBP15.27■□□□□ 0.04
SMC4-210ENST00000469762 PRXQ9BXM0 1461 aa15.26■□□□□ 0.03
SMC4-210ENST00000469762 RANGAP1P46060 587 aaPredicted RBP15.25■□□□□ 0.03
SMC4-210ENST00000469762 ERICH3Q5RHP9 1530 aa15.23■□□□□ 0.03
SMC4-210ENST00000469762 KANK4Q5T7N3 995 aaPredicted RBP15.23■□□□□ 0.03
SMC4-210ENST00000469762 CLSPNQ9HAW4 1339 aa15.18■□□□□ 0.02
SMC4-210ENST00000469762 APLP2Q06481 763 aa15.18■□□□□ 0.02
SMC4-210ENST00000469762 RRBP1Q9P2E9 1410 aaKnown RBP15.17■□□□□ 0.02
SMC4-210ENST00000469762 CUX1P39880 1505 aa15.16■□□□□ 0.02
SMC4-210ENST00000469762 CUX2O14529 1486 aa15.15■□□□□ 0.02
SMC4-210ENST00000469762 PRDM2Q13029 1718 aa15.12■□□□□ 0.01
SMC4-210ENST00000469762 ARHGAP35Q9NRY4 1499 aa15.09■□□□□ 0.01
SMC4-210ENST00000469762 HMGXB3Q12766 1538 aa15.07■□□□□ 0
SMC4-210ENST00000469762 MYT1Q01538 1121 aa15.06■□□□□ 0
SMC4-210ENST00000469762 SUPT16HQ9Y5B9 1047 aaKnown RBP15.05■□□□□ -0
SMC4-210ENST00000469762 MAPKBP1O60336 1514 aa15.04■□□□□ -0
SMC4-210ENST00000469762 CCNB3Q8WWL7 1395 aa15.03■□□□□ -0
SMC4-210ENST00000469762 NCAPD3P42695 1498 aa15.02■□□□□ -0
SMC4-210ENST00000469762 KIF27Q86VH2 1401 aa15.02■□□□□ -0
SMC4-210ENST00000469762 CFTRP13569 1480 aa14.99□□□□□ -0.01
SMC4-210ENST00000469762 KCNH8Q96L42 1107 aa14.98□□□□□ -0.01
SMC4-210ENST00000469762 RAB3GAP2Q9H2M9 1393 aa14.96□□□□□ -0.01
SMC4-210ENST00000469762 TIAM1Q13009 1591 aa14.95□□□□□ -0.02
SMC4-210ENST00000469762 IGF1RP08069 1367 aa14.93□□□□□ -0.02
SMC4-210ENST00000469762 MAP3K1Q13233 1512 aa14.92□□□□□ -0.02
SMC4-210ENST00000469762 ITGAEP38570 1179 aa14.91□□□□□ -0.02
SMC4-210ENST00000469762 WDR97A6NE52 1622 aa14.9□□□□□ -0.02
SMC4-210ENST00000469762 PHLDB1Q86UU1 1377 aa14.89□□□□□ -0.03
SMC4-210ENST00000469762 TSHZ2Q9NRE2 1034 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms