RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 NISCHQ9Y2I1 1504 aa42.93■■■■■ 4.46
SMC4-209ENST00000468653 CCDC180Q9P1Z9 1646 aa37.42■■■■□ 3.58
SMC4-209ENST00000468653 ZCCHC6Q5VYS8 1495 aaKnown RBP36.04■■■■□ 3.36
SMC4-209ENST00000468653 DCAF8L2P0C7V8 631 aa35.61■■■■□ 3.29
SMC4-209ENST00000468653 ABCC9O60706 1549 aa35.5■■■■□ 3.27
SMC4-209ENST00000468653 DCAF1Q9Y4B6 1507 aa35.47■■■■□ 3.27
SMC4-209ENST00000468653 SHROOM4Q9ULL8 1493 aa35.08■■■■□ 3.21
SMC4-209ENST00000468653 MYO15BQ96JP2 1530 aa35.07■■■■□ 3.2
SMC4-209ENST00000468653 NACADO15069 1562 aa34.9■■■■□ 3.18
SMC4-209ENST00000468653 RB1CC1Q8TDY2 1594 aa34.62■■■■□ 3.13
SMC4-209ENST00000468653 SCRIBQ14160 1630 aa34.46■■■■□ 3.11
SMC4-209ENST00000468653 UNC13AQ9UPW8 1703 aa33.85■■■■□ 3.01
SMC4-209ENST00000468653 SUPT5HO00267 1087 aaKnown RBP33.77■■■■□ 3
SMC4-209ENST00000468653 BICRAQ9NZM4 1560 aa33.53■■■□□ 2.96
SMC4-209ENST00000468653 PABPN1Q86U42 306 aaKnown RBP eCLIP33.52■■■□□ 2.96
SMC4-209ENST00000468653 CECR2Q9BXF3 1484 aa33.38■■■□□ 2.93
SMC4-209ENST00000468653 RSF1Q96T23 1441 aaPredicted RBP33.31■■■□□ 2.92
SMC4-209ENST00000468653 MROH2BQ7Z745 1585 aa33.17■■■□□ 2.9
SMC4-209ENST00000468653 BAZ1AQ9NRL2 1556 aaPredicted RBP33.16■■■□□ 2.9
SMC4-209ENST00000468653 SMARCA4P51532 1647 aa33■■■□□ 2.87
SMC4-209ENST00000468653 WIZO95785 1651 aa32.89■■■□□ 2.86
SMC4-209ENST00000468653 PEG3Q9GZU2 1588 aa32.58■■■□□ 2.81
SMC4-209ENST00000468653 TOP2AP11388 1531 aaKnown RBP32.56■■■□□ 2.8
SMC4-209ENST00000468653 EIF4G1Q04637 1599 aaKnown RBP32.55■■■□□ 2.8
SMC4-209ENST00000468653 ATAD2BQ9ULI0 1458 aa32.49■■■□□ 2.79
SMC4-209ENST00000468653 SMARCA2P51531 1590 aa32.48■■■□□ 2.79
SMC4-209ENST00000468653 BAZ1BQ9UIG0 1483 aaKnown RBP32.33■■■□□ 2.77
SMC4-209ENST00000468653 CHIC1Q5VXU3 224 aa32.26■■■□□ 2.75
SMC4-209ENST00000468653 CCDC88BA6NC98 1476 aa32.24■■■□□ 2.75
SMC4-209ENST00000468653 NCAPD3P42695 1498 aa32.21■■■□□ 2.75
SMC4-209ENST00000468653 HMGXB3Q12766 1538 aa32.14■■■□□ 2.74
SMC4-209ENST00000468653 CC2D2AQ9P2K1 1620 aa32.09■■■□□ 2.73
SMC4-209ENST00000468653 TRIM41Q8WV44 630 aa31.74■■■□□ 2.67
SMC4-209ENST00000468653 ABCC8Q09428 1581 aa31.55■■■□□ 2.64
SMC4-209ENST00000468653 CFTRP13569 1480 aa31.49■■■□□ 2.63
SMC4-209ENST00000468653 CADPSQ9ULU8 1353 aa31.42■■■□□ 2.62
SMC4-209ENST00000468653 WRNQ14191 1432 aaPredicted RBP eCLIP31.38■■■□□ 2.61
SMC4-209ENST00000468653 DNAJC5BQ9UF47 199 aa31.34■■■□□ 2.61
SMC4-209ENST00000468653 PRDM2Q13029 1718 aa31.27■■■□□ 2.6
SMC4-209ENST00000468653 SYNJ1O43426 1573 aa31.2■■■□□ 2.59
SMC4-209ENST00000468653 FAM9AQ8IZU1 332 aaPredicted RBP31.18■■■□□ 2.58
SMC4-209ENST00000468653 NESP48681 1621 aa31.14■■■□□ 2.58
SMC4-209ENST00000468653 LAMC3Q9Y6N6 1575 aa31.12■■■□□ 2.57
SMC4-209ENST00000468653 TOP2BQ02880 1626 aa31.08■■■□□ 2.57
SMC4-209ENST00000468653 FANCD2Q9BXW9 1451 aa31.06■■■□□ 2.56
SMC4-209ENST00000468653 LOC105371045A0A1W2PR82 267 aa31.05■■■□□ 2.56
SMC4-209ENST00000468653 BIVM-ERCC5R4GMW8 1640 aa31.03■■■□□ 2.56
SMC4-209ENST00000468653 CUX1P39880 1505 aa31.02■■■□□ 2.56
SMC4-209ENST00000468653 SOGA1O94964 1423 aa30.97■■■□□ 2.55
SMC4-209ENST00000468653 PDS5BQ9NTI5 1447 aa30.93■■■□□ 2.54
SMC4-209ENST00000468653 EEA1Q15075 1411 aa30.91■■■□□ 2.54
SMC4-209ENST00000468653 CEP164Q9UPV0 1460 aa30.88■■■□□ 2.53
SMC4-209ENST00000468653 RUSC2Q8N2Y8 1516 aa30.84■■■□□ 2.53
SMC4-209ENST00000468653 CSRNP3Q8WYN3 585 aa30.79■■■□□ 2.52
SMC4-209ENST00000468653 EHMT2Q96KQ7 1210 aa30.77■■■□□ 2.52
SMC4-209ENST00000468653 DNMBPQ6XZF7 1577 aa30.75■■■□□ 2.51
SMC4-209ENST00000468653 KIF21AQ7Z4S6 1674 aa30.72■■■□□ 2.51
SMC4-209ENST00000468653 TOPBP1Q92547 1522 aa30.71■■■□□ 2.51
SMC4-209ENST00000468653 FGD5Q6ZNL6 1462 aa30.7■■■□□ 2.51
SMC4-209ENST00000468653 URB2Q14146 1524 aaKnown RBP30.66■■■□□ 2.5
SMC4-209ENST00000468653 KIF27Q86VH2 1401 aa30.6■■■□□ 2.49
SMC4-209ENST00000468653 POLA1P09884 1462 aaPredicted RBP30.56■■■□□ 2.48
SMC4-209ENST00000468653 CUX2O14529 1486 aa30.52■■■□□ 2.48
SMC4-209ENST00000468653 MRC2Q9UBG0 1479 aa30.51■■■□□ 2.47
SMC4-209ENST00000468653 GOLGA3Q08378 1498 aa30.48■■■□□ 2.47
SMC4-209ENST00000468653 ERCC6Q03468 1493 aa30.47■■■□□ 2.47
SMC4-209ENST00000468653 RAD54L2Q9Y4B4 1467 aa30.47■■■□□ 2.47
SMC4-209ENST00000468653 KIF21BO75037 1637 aa30.47■■■□□ 2.47
SMC4-209ENST00000468653 UBTFP17480 764 aaKnown RBP30.43■■■□□ 2.46
SMC4-209ENST00000468653 ABCA10Q8WWZ4 1543 aa30.42■■■□□ 2.46
SMC4-209ENST00000468653 TNIKQ9UKE5 1360 aa30.39■■■□□ 2.45
SMC4-209ENST00000468653 PRXQ9BXM0 1461 aa30.34■■■□□ 2.45
SMC4-209ENST00000468653 RAPGEF2Q9Y4G8 1499 aa30.34■■■□□ 2.45
SMC4-209ENST00000468653 IGF1RP08069 1367 aa30.32■■■□□ 2.44
SMC4-209ENST00000468653 WDR62O43379 1518 aa30.32■■■□□ 2.44
SMC4-209ENST00000468653 ERICH3Q5RHP9 1530 aa30.28■■■□□ 2.44
SMC4-209ENST00000468653 WDR97A6NE52 1622 aa30.27■■■□□ 2.44
SMC4-209ENST00000468653 TARBP1Q13395 1621 aaKnown RBP30.22■■■□□ 2.43
SMC4-209ENST00000468653 CEP162Q5TB80 1403 aa30.22■■■□□ 2.43
SMC4-209ENST00000468653 THOC2Q8NI27 1593 aaKnown RBP30.21■■■□□ 2.43
SMC4-209ENST00000468653 TDRD9Q8NDG6 1382 aaKnown RBP30.21■■■□□ 2.43
SMC4-209ENST00000468653 CARMIL1Q5VZK9 1371 aa30.19■■■□□ 2.42
SMC4-209ENST00000468653 ABCA5Q8WWZ7 1642 aa30.15■■■□□ 2.42
SMC4-209ENST00000468653 GAPVD1Q14C86 1478 aa30.15■■■□□ 2.42
SMC4-209ENST00000468653 IFT140Q96RY7 1462 aa30.14■■■□□ 2.42
SMC4-209ENST00000468653 CUL7Q14999 1698 aa30.06■■■□□ 2.4
SMC4-209ENST00000468653 AQRO60306 1485 aaKnown RBP eCLIP30.01■■■□□ 2.391e-8■■■■■ 109.5
SMC4-209ENST00000468653 CLIP1P30622 1438 aa30.01■■■□□ 2.39
SMC4-209ENST00000468653 ZNF608Q9ULD9 1512 aaPredicted RBP29.96■■■□□ 2.39
SMC4-209ENST00000468653 RANGAP1P46060 587 aaPredicted RBP29.96■■■□□ 2.39
SMC4-209ENST00000468653 PBRM1Q86U86 1689 aa29.92■■■□□ 2.38
SMC4-209ENST00000468653 GRIN2BQ13224 1484 aa29.92■■■□□ 2.38
SMC4-209ENST00000468653 EIF4G3O43432 1585 aaKnown RBP29.84■■■□□ 2.37
SMC4-209ENST00000468653 FHAD1B1AJZ9 1412 aa29.82■■■□□ 2.36
SMC4-209ENST00000468653 ADAMTS12P58397 1594 aa29.77■■■□□ 2.36
SMC4-209ENST00000468653 VPS8Q8N3P4 1428 aa29.72■■■□□ 2.35
SMC4-209ENST00000468653 SNAPC4Q5SXM2 1469 aa29.72■■■□□ 2.35
SMC4-209ENST00000468653 CTTNBP2Q8WZ74 1663 aa29.7■■■□□ 2.34
SMC4-209ENST00000468653 ARHGAP35Q9NRY4 1499 aa29.69■■■□□ 2.34
SMC4-209ENST00000468653 ARAP1Q96P48 1450 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms