RNA–Protein interactions for RNA: ENST00000472282.5

SMC4-213, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 667 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-213ENST00000472282 AEBP2Q6ZN18 517 aaPredicted RBP29.12■■■□□ 2.25
SMC4-213ENST00000472282 CHIC1Q5VXU3 224 aa27.33■■□□□ 1.97
SMC4-213ENST00000472282 SENP3Q9H4L4 574 aaPredicted RBP24.79■■□□□ 1.56
SMC4-213ENST00000472282 PHF23Q9BUL5 403 aaPredicted RBP24.43■■□□□ 1.5
SMC4-213ENST00000472282 FOXD1Q16676 465 aa23.34■■□□□ 1.33
SMC4-213ENST00000472282 POTEDQ86YR6 584 aa23.13■■□□□ 1.29
SMC4-213ENST00000472282 NISCHQ9Y2I1 1504 aa22.62■■□□□ 1.21
SMC4-213ENST00000472282 MSH5O43196 834 aa22.04■■□□□ 1.12
SMC4-213ENST00000472282 PLPPR3Q6T4P5 718 aa21.91■■□□□ 1.1
SMC4-213ENST00000472282 PIAS4Q8N2W9 510 aaPredicted RBP21.52■■□□□ 1.04
SMC4-213ENST00000472282 PPP6R1Q9UPN7 881 aa21.28■■□□□ 1
SMC4-213ENST00000472282 ADRA2BP18089 450 aa21.26■□□□□ 0.99
SMC4-213ENST00000472282 CCDC180Q9P1Z9 1646 aa20.29■□□□□ 0.84
SMC4-213ENST00000472282 ABCC9O60706 1549 aa20.13■□□□□ 0.81
SMC4-213ENST00000472282 SCAF1Q9H7N4 1312 aaKnown RBP19.67■□□□□ 0.74
SMC4-213ENST00000472282 MAPK8IP2Q13387 824 aaPredicted RBP19.65■□□□□ 0.74
SMC4-213ENST00000472282 DMRT2Q9Y5R5 561 aa19.58■□□□□ 0.72
SMC4-213ENST00000472282 CACNB1Q02641 598 aaPredicted RBP19.49■□□□□ 0.71
SMC4-213ENST00000472282 RB1CC1Q8TDY2 1594 aa19.19■□□□□ 0.66
SMC4-213ENST00000472282 PPP4R3CPQ6ZMV5 832 aa19.15■□□□□ 0.66
SMC4-213ENST00000472282 NACADO15069 1562 aa19.08■□□□□ 0.65
SMC4-213ENST00000472282 DCAF8L2P0C7V8 631 aa18.96■□□□□ 0.63
SMC4-213ENST00000472282 UNC13AQ9UPW8 1703 aa18.96■□□□□ 0.63
SMC4-213ENST00000472282 CNKSR2Q8WXI2 1034 aa18.84■□□□□ 0.61
SMC4-213ENST00000472282 MYO15BQ96JP2 1530 aa18.83■□□□□ 0.6
SMC4-213ENST00000472282 RNF39Q9H2S5 420 aa18.81■□□□□ 0.6
SMC4-213ENST00000472282 DCAF8L1A6NGE4 600 aa18.79■□□□□ 0.6
SMC4-213ENST00000472282 ZCCHC6Q5VYS8 1495 aaKnown RBP18.78■□□□□ 0.6
SMC4-213ENST00000472282 DNAJC5BQ9UF47 199 aa18.77■□□□□ 0.6
SMC4-213ENST00000472282 HOXD11P31277 338 aaPredicted RBP18.76■□□□□ 0.59
SMC4-213ENST00000472282 PABPN1Q86U42 306 aaKnown RBP eCLIP18.72■□□□□ 0.59
SMC4-213ENST00000472282 BICRAQ9NZM4 1560 aa18.72■□□□□ 0.59
SMC4-213ENST00000472282 DCAF1Q9Y4B6 1507 aa18.66■□□□□ 0.58
SMC4-213ENST00000472282 RNF216Q9NWF9 866 aaPredicted RBP18.66■□□□□ 0.58
SMC4-213ENST00000472282 NCBP3Q53F19 620 aaKnown RBP18.53■□□□□ 0.56
SMC4-213ENST00000472282 SCRIBQ14160 1630 aa18.51■□□□□ 0.55
SMC4-213ENST00000472282 C1QBPQ07021 282 aaKnown RBP18.41■□□□□ 0.54
SMC4-213ENST00000472282 SHROOM4Q9ULL8 1493 aa18.33■□□□□ 0.52
SMC4-213ENST00000472282 CC2D2AQ9P2K1 1620 aa18.23■□□□□ 0.51
SMC4-213ENST00000472282 EIF4G1Q04637 1599 aaKnown RBP18.2■□□□□ 0.5
SMC4-213ENST00000472282 NPM3O75607 178 aaKnown RBP18.11■□□□□ 0.49
SMC4-213ENST00000472282 CECR2Q9BXF3 1484 aa18.08■□□□□ 0.49
SMC4-213ENST00000472282 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.93■□□□□ 0.462e-7■■■■■ 32.9
SMC4-213ENST00000472282 POTEHQ6S545 545 aa17.91■□□□□ 0.46
SMC4-213ENST00000472282 KCNA4P22459 653 aa17.74■□□□□ 0.43
SMC4-213ENST00000472282 SMARCA4P51532 1647 aa17.66■□□□□ 0.42
SMC4-213ENST00000472282 NCAPD3P42695 1498 aa17.6■□□□□ 0.41
SMC4-213ENST00000472282 ATAD2BQ9ULI0 1458 aa17.59■□□□□ 0.41
SMC4-213ENST00000472282 BAZ1AQ9NRL2 1556 aaPredicted RBP17.53■□□□□ 0.4
SMC4-213ENST00000472282 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
SMC4-213ENST00000472282 HMGXB3Q12766 1538 aa17.51■□□□□ 0.39
SMC4-213ENST00000472282 MROH2BQ7Z745 1585 aa17.47■□□□□ 0.39
SMC4-213ENST00000472282 U3KPZ7 1027 aaPredicted RBP17.46■□□□□ 0.39
SMC4-213ENST00000472282 PEG3Q9GZU2 1588 aa17.45■□□□□ 0.38
SMC4-213ENST00000472282 BAZ1BQ9UIG0 1483 aaKnown RBP17.41■□□□□ 0.38
SMC4-213ENST00000472282 NESP48681 1621 aa17.36■□□□□ 0.37
SMC4-213ENST00000472282 DSG3P32926 999 aa17.33■□□□□ 0.36
SMC4-213ENST00000472282 WIZO95785 1651 aa17.32■□□□□ 0.36
SMC4-213ENST00000472282 ERCC6Q03468 1493 aa17.31■□□□□ 0.36
SMC4-213ENST00000472282 CAPN15O75808 1086 aa17.26■□□□□ 0.35
SMC4-213ENST00000472282 SLC4A2P04920 1241 aa17.25■□□□□ 0.35
SMC4-213ENST00000472282 SPINK5Q9NQ38 1064 aaPredicted RBP17.25■□□□□ 0.35
SMC4-213ENST00000472282 CUX2O14529 1486 aa17.23■□□□□ 0.35
SMC4-213ENST00000472282 KIF21AQ7Z4S6 1674 aa17.21■□□□□ 0.35
SMC4-213ENST00000472282 LAMC3Q9Y6N6 1575 aa17.21■□□□□ 0.35
SMC4-213ENST00000472282 APLP2Q06481 763 aa17.21■□□□□ 0.35
SMC4-213ENST00000472282 THOC2Q8NI27 1593 aaKnown RBP17.19■□□□□ 0.34
SMC4-213ENST00000472282 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.15■□□□□ 0.34
SMC4-213ENST00000472282 HNRNPUL2Q1KMD3 747 aaKnown RBP17.15■□□□□ 0.34
SMC4-213ENST00000472282 RSF1Q96T23 1441 aaPredicted RBP17.11■□□□□ 0.33
SMC4-213ENST00000472282 DNAJC5Q9H3Z4 198 aa17.06■□□□□ 0.32
SMC4-213ENST00000472282 CADPSQ9ULU8 1353 aa17.05■□□□□ 0.32
SMC4-213ENST00000472282 TOP2AP11388 1531 aaKnown RBP17.03■□□□□ 0.32
SMC4-213ENST00000472282 PDS5BQ9NTI5 1447 aa17.03■□□□□ 0.32
SMC4-213ENST00000472282 SAMD1Q6SPF0 538 aaPredicted RBP17.01■□□□□ 0.31
SMC4-213ENST00000472282 ZNF219Q9P2Y4 722 aaPredicted RBP17■□□□□ 0.31
SMC4-213ENST00000472282 TRHP20396 242 aaPredicted RBP16.96■□□□□ 0.31
SMC4-213ENST00000472282 MRC2Q9UBG0 1479 aa16.93■□□□□ 0.3
SMC4-213ENST00000472282 WDR62O43379 1518 aa16.92■□□□□ 0.3
SMC4-213ENST00000472282 PRDM2Q13029 1718 aa16.91■□□□□ 0.3
SMC4-213ENST00000472282 CFTRP13569 1480 aa16.91■□□□□ 0.3
SMC4-213ENST00000472282 FANCD2Q9BXW9 1451 aa16.89■□□□□ 0.29
SMC4-213ENST00000472282 CEP164Q9UPV0 1460 aa16.89■□□□□ 0.29
SMC4-213ENST00000472282 MYCNP04198 464 aaPredicted RBP16.84■□□□□ 0.29
SMC4-213ENST00000472282 CCDC88BA6NC98 1476 aa16.83■□□□□ 0.28
SMC4-213ENST00000472282 SLC4A1APQ9BWU0 796 aaKnown RBP16.83■□□□□ 0.28
SMC4-213ENST00000472282 ABCB7O75027 752 aa16.79■□□□□ 0.28
SMC4-213ENST00000472282 URB2Q14146 1524 aaKnown RBP16.79■□□□□ 0.28
SMC4-213ENST00000472282 FOXD4L1Q9NU39 408 aa16.65■□□□□ 0.26
SMC4-213ENST00000472282 TOPBP1Q92547 1522 aa16.61■□□□□ 0.25
SMC4-213ENST00000472282 DNMBPQ6XZF7 1577 aa16.56■□□□□ 0.24
SMC4-213ENST00000472282 ZNF608Q9ULD9 1512 aaPredicted RBP16.56■□□□□ 0.24
SMC4-213ENST00000472282 IFT140Q96RY7 1462 aa16.53■□□□□ 0.24
SMC4-213ENST00000472282 CHRDL2Q6WN34 429 aa16.51■□□□□ 0.23
SMC4-213ENST00000472282 EIF4G3O43432 1585 aaKnown RBP16.51■□□□□ 0.23
SMC4-213ENST00000472282 ABCC8Q09428 1581 aa16.51■□□□□ 0.23
SMC4-213ENST00000472282 TARBP1Q13395 1621 aaKnown RBP16.5■□□□□ 0.23
SMC4-213ENST00000472282 POLA2Q14181 598 aa16.49■□□□□ 0.23
SMC4-213ENST00000472282 RBM42Q9BTD8 480 aaKnown RBP16.46■□□□□ 0.23
SMC4-213ENST00000472282 POLA1P09884 1462 aaPredicted RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms