RNA–Protein interactions for RNA: ENST00000467468.5

SMC4-208, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 566 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-208ENST00000467468 AEBP2Q6ZN18 517 aaPredicted RBP21.74■■□□□ 1.07
SMC4-208ENST00000467468 CHIC1Q5VXU3 224 aa21.24■□□□□ 0.99
SMC4-208ENST00000467468 SENP3Q9H4L4 574 aaPredicted RBP18.61■□□□□ 0.57
SMC4-208ENST00000467468 PHF23Q9BUL5 403 aaPredicted RBP18.58■□□□□ 0.56
SMC4-208ENST00000467468 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
SMC4-208ENST00000467468 FOXD1Q16676 465 aa17.18■□□□□ 0.34
SMC4-208ENST00000467468 ADRA2BP18089 450 aa16.42■□□□□ 0.22
SMC4-208ENST00000467468 PPP6R1Q9UPN7 881 aa16.4■□□□□ 0.22
SMC4-208ENST00000467468 PIAS4Q8N2W9 510 aaPredicted RBP16.25■□□□□ 0.19
SMC4-208ENST00000467468 MSH5O43196 834 aa16■□□□□ 0.15
SMC4-208ENST00000467468 SCAF1Q9H7N4 1312 aaKnown RBP15.18■□□□□ 0.02
SMC4-208ENST00000467468 PPP4R3CPQ6ZMV5 832 aa15.15■□□□□ 0.02
SMC4-208ENST00000467468 MAPK8IP2Q13387 824 aaPredicted RBP14.9□□□□□ -0.02
SMC4-208ENST00000467468 NCBP3Q53F19 620 aaKnown RBP14.83□□□□□ -0.04
SMC4-208ENST00000467468 DMRT2Q9Y5R5 561 aa14.8□□□□□ -0.04
SMC4-208ENST00000467468 CNKSR2Q8WXI2 1034 aa14.79□□□□□ -0.04
SMC4-208ENST00000467468 KCNA4P22459 653 aa14.65□□□□□ -0.06
SMC4-208ENST00000467468 POTEDQ86YR6 584 aa14.62□□□□□ -0.07
SMC4-208ENST00000467468 RNF216Q9NWF9 866 aaPredicted RBP14.51□□□□□ -0.09
SMC4-208ENST00000467468 NPM3O75607 178 aaKnown RBP14.49□□□□□ -0.09
SMC4-208ENST00000467468 HOXD11P31277 338 aaPredicted RBP14.45□□□□□ -0.1
SMC4-208ENST00000467468 DCAF8L1A6NGE4 600 aa14.21□□□□□ -0.13
SMC4-208ENST00000467468 DNAJC5BQ9UF47 199 aa14.12□□□□□ -0.15
SMC4-208ENST00000467468 SLC4A1APQ9BWU0 796 aaKnown RBP14.02□□□□□ -0.17
SMC4-208ENST00000467468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.83□□□□□ -0.22e-7■■■■■ 32.9
SMC4-208ENST00000467468 SLC4A2P04920 1241 aa13.67□□□□□ -0.22
SMC4-208ENST00000467468 RNF39Q9H2S5 420 aa13.63□□□□□ -0.23
SMC4-208ENST00000467468 FOXD4L1Q9NU39 408 aa13.6□□□□□ -0.23
SMC4-208ENST00000467468 C1QBPQ07021 282 aaKnown RBP13.52□□□□□ -0.25
SMC4-208ENST00000467468 U3KPZ7 1027 aaPredicted RBP13.52□□□□□ -0.25
SMC4-208ENST00000467468 EHMT2Q96KQ7 1210 aa13.48□□□□□ -0.25
SMC4-208ENST00000467468 MYCNP04198 464 aaPredicted RBP13.47□□□□□ -0.25
SMC4-208ENST00000467468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.46□□□□□ -0.25
SMC4-208ENST00000467468 HNRNPUL2Q1KMD3 747 aaKnown RBP13.46□□□□□ -0.25
SMC4-208ENST00000467468 ZBTB22O15209 634 aa13.44□□□□□ -0.26
SMC4-208ENST00000467468 APLP2Q06481 763 aa13.39□□□□□ -0.27
SMC4-208ENST00000467468 CACNB1Q02641 598 aaPredicted RBP13.38□□□□□ -0.27
SMC4-208ENST00000467468 SAMD1Q6SPF0 538 aaPredicted RBP13.38□□□□□ -0.27
SMC4-208ENST00000467468 CSRNP3Q8WYN3 585 aa13.32□□□□□ -0.28
SMC4-208ENST00000467468 CAPN15O75808 1086 aa13.19□□□□□ -0.3
SMC4-208ENST00000467468 ATXN8OSP0DMR3 200 aa13.16□□□□□ -0.3
SMC4-208ENST00000467468 SPINK5Q9NQ38 1064 aaPredicted RBP13.15□□□□□ -0.3
SMC4-208ENST00000467468 ZNF219Q9P2Y4 722 aaPredicted RBP13.14□□□□□ -0.31
SMC4-208ENST00000467468 TRHP20396 242 aaPredicted RBP13.07□□□□□ -0.32
SMC4-208ENST00000467468 ATF5Q9Y2D1 282 aaPredicted RBP12.97□□□□□ -0.33
SMC4-208ENST00000467468 DSG3P32926 999 aa12.93□□□□□ -0.34
SMC4-208ENST00000467468 ABCB7O75027 752 aa12.87□□□□□ -0.35
SMC4-208ENST00000467468 POLA2Q14181 598 aa12.82□□□□□ -0.36
SMC4-208ENST00000467468 ZBTB12Q9Y330 459 aaPredicted RBP12.73□□□□□ -0.37
SMC4-208ENST00000467468 FBLN2P98095 1184 aa12.62□□□□□ -0.39
SMC4-208ENST00000467468 RBM42Q9BTD8 480 aaKnown RBP12.44□□□□□ -0.42
SMC4-208ENST00000467468 MKRN4PQ13434 485 aaPredicted RBP12.43□□□□□ -0.42
SMC4-208ENST00000467468 OSCARQ8IYS5 282 aa12.4□□□□□ -0.42
SMC4-208ENST00000467468 SPDYE2BA6NHP3 402 aa12.32□□□□□ -0.44
SMC4-208ENST00000467468 SPDYE6P0CI01 402 aa12.32□□□□□ -0.44
SMC4-208ENST00000467468 SPDYE2Q495Y8 402 aa12.32□□□□□ -0.44
SMC4-208ENST00000467468 ZNF692Q9BU19 519 aaPredicted RBP12.24□□□□□ -0.45
SMC4-208ENST00000467468 AKT1S1Q96B36 256 aa12.22□□□□□ -0.45
SMC4-208ENST00000467468 SPDYE4A6NLX3 237 aa12.2□□□□□ -0.46
SMC4-208ENST00000467468 SSUH2Q9Y2M2 353 aa12.17□□□□□ -0.46
SMC4-208ENST00000467468 FKBP8Q14318 412 aa12.11□□□□□ -0.47
SMC4-208ENST00000467468 PABPN1Q86U42 306 aaKnown RBP eCLIP12.05□□□□□ -0.48
SMC4-208ENST00000467468 REM2Q8IYK8 340 aaPredicted RBP12.05□□□□□ -0.48
SMC4-208ENST00000467468 SPDYE1Q8NFV5 336 aaPredicted RBP11.99□□□□□ -0.49
SMC4-208ENST00000467468 PROM2Q8N271 834 aa11.94□□□□□ -0.5
SMC4-208ENST00000467468 STAG3Q9UJ98 1225 aa11.93□□□□□ -0.5
SMC4-208ENST00000467468 PITPNM1O00562 1244 aa11.91□□□□□ -0.5
SMC4-208ENST00000467468 CLEC11AQ9Y240 323 aa11.91□□□□□ -0.5
SMC4-208ENST00000467468 CHRDL2Q6WN34 429 aa11.88□□□□□ -0.51
SMC4-208ENST00000467468 PRR29P0C7W0 189 aa11.8□□□□□ -0.52
SMC4-208ENST00000467468 FBXO3Q9UK99 471 aa11.79□□□□□ -0.52
SMC4-208ENST00000467468 FXR2P51116 673 aaKnown RBP eCLIP11.7□□□□□ -0.542e-10■■■■■ 37.2
SMC4-208ENST00000467468 PIP4P2Q8N4L2 257 aa11.68□□□□□ -0.54
SMC4-208ENST00000467468 PLEKHG5O94827 1062 aa11.65□□□□□ -0.54
SMC4-208ENST00000467468 PRKAR2AP13861 404 aaKnown RBP11.63□□□□□ -0.55
SMC4-208ENST00000467468 POTEHQ6S545 545 aa11.59□□□□□ -0.55
SMC4-208ENST00000467468 MIER1Q8N108 512 aa11.59□□□□□ -0.55
SMC4-208ENST00000467468 PLCD3Q8N3E9 789 aa11.59□□□□□ -0.55
SMC4-208ENST00000467468 CHADLQ6NUI6 762 aa11.57□□□□□ -0.56
SMC4-208ENST00000467468 VASPP50552 380 aaPredicted RBP11.56□□□□□ -0.56
SMC4-208ENST00000467468 CREBZFQ9NS37 354 aa11.56□□□□□ -0.56
SMC4-208ENST00000467468 ZBTB47Q9UFB7 747 aaPredicted RBP11.54□□□□□ -0.56
SMC4-208ENST00000467468 FARP1Q9Y4F1 1045 aaPredicted RBP11.5□□□□□ -0.57
SMC4-208ENST00000467468 NPM1P06748 294 aaKnown RBP eCLIP11.49□□□□□ -0.57
SMC4-208ENST00000467468 KLHL34Q8N239 644 aa11.42□□□□□ -0.58
SMC4-208ENST00000467468 MNX1P50219 401 aaPredicted RBP11.4□□□□□ -0.58
SMC4-208ENST00000467468 HAX1O00165 279 aa11.37□□□□□ -0.59
SMC4-208ENST00000467468 PAK3O75914 559 aaPredicted RBP11.34□□□□□ -0.59
SMC4-208ENST00000467468 IFNLR1Q8IU57 520 aaPredicted RBP11.34□□□□□ -0.59
SMC4-208ENST00000467468 C19orf67A6NJJ6 358 aa11.32□□□□□ -0.6
SMC4-208ENST00000467468 CD44P16070 742 aaKnown RBP11.31□□□□□ -0.6
SMC4-208ENST00000467468 SPOCK2Q92563 424 aa11.3□□□□□ -0.6
SMC4-208ENST00000467468 FAM212AQ96EL1 285 aa11.26□□□□□ -0.61
SMC4-208ENST00000467468 NUBP1P53384 320 aa11.25□□□□□ -0.61
SMC4-208ENST00000467468 ZRANB1Q9UGI0 708 aa11.23□□□□□ -0.61
SMC4-208ENST00000467468 RASEFQ8IZ41 740 aa11.22□□□□□ -0.61
SMC4-208ENST00000467468 TSPYL2Q9H2G4 693 aaPredicted RBP11.22□□□□□ -0.61
SMC4-208ENST00000467468 GSE1Q14687 1217 aa11.2□□□□□ -0.62
SMC4-208ENST00000467468 DCAF8Q5TAQ9 597 aa11.19□□□□□ -0.62
SMC4-208ENST00000467468 ZNF579Q8NAF0 562 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms