RNA–Protein interactions for RNA: ENST00000343805.10

SP140-201, Transcript of SP140 nuclear body protein, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SP140, Length 2,910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-201ENST00000343805 CHIC1Q5VXU3 224 aa19■□□□□ 0.63
SP140-201ENST00000343805 AEBP2Q6ZN18 517 aaPredicted RBP18.7■□□□□ 0.58
SP140-201ENST00000343805 PHF23Q9BUL5 403 aaPredicted RBP17.39■□□□□ 0.37
SP140-201ENST00000343805 EHMT2Q96KQ7 1210 aa17.03■□□□□ 0.32
SP140-201ENST00000343805 NISCHQ9Y2I1 1504 aa16.97■□□□□ 0.31
SP140-201ENST00000343805 SLC24A1O60721 1099 aa16.34■□□□□ 0.21
SP140-201ENST00000343805 PLPPR3Q6T4P5 718 aa16.26■□□□□ 0.19
SP140-201ENST00000343805 KCNA4P22459 653 aa16.12■□□□□ 0.17
SP140-201ENST00000343805 CSRNP3Q8WYN3 585 aa15.88■□□□□ 0.13
SP140-201ENST00000343805 ADRA2BP18089 450 aa15.76■□□□□ 0.11
SP140-201ENST00000343805 RTN4Q9NQC3 1192 aaKnown RBP15.75■□□□□ 0.11
SP140-201ENST00000343805 PELP1Q8IZL8 1130 aaKnown RBP15.6■□□□□ 0.09
SP140-201ENST00000343805 MYT1Q01538 1121 aa15.46■□□□□ 0.06
SP140-201ENST00000343805 SLC4A1APQ9BWU0 796 aaKnown RBP15.22■□□□□ 0.03
SP140-201ENST00000343805 PPP6R1Q9UPN7 881 aa15.1■□□□□ 0.01
SP140-201ENST00000343805 ZBTB22O15209 634 aa15.06■□□□□ 0
SP140-201ENST00000343805 SHROOM4Q9ULL8 1493 aa14.99□□□□□ -0.01
SP140-201ENST00000343805 TTBK1Q5TCY1 1321 aaPredicted RBP14.98□□□□□ -0.01
SP140-201ENST00000343805 PRKCSHP14314 528 aaPredicted RBP14.88□□□□□ -0.03
SP140-201ENST00000343805 AMER1Q5JTC6 1135 aaPredicted RBP14.87□□□□□ -0.03
SP140-201ENST00000343805 SENP3Q9H4L4 574 aaPredicted RBP14.84□□□□□ -0.03
SP140-201ENST00000343805 SUPT5HO00267 1087 aaKnown RBP14.76□□□□□ -0.05
SP140-201ENST00000343805 DCAF8L2P0C7V8 631 aa14.68□□□□□ -0.06
SP140-201ENST00000343805 NPM3O75607 178 aaKnown RBP14.54□□□□□ -0.08
SP140-201ENST00000343805 NCBP3Q53F19 620 aaKnown RBP14.43□□□□□ -0.1
SP140-201ENST00000343805 PPP4R3CPQ6ZMV5 832 aa14.43□□□□□ -0.1
SP140-201ENST00000343805 ZCCHC6Q5VYS8 1495 aaKnown RBP14.31□□□□□ -0.12
SP140-201ENST00000343805 FKBP8Q14318 412 aa14.23□□□□□ -0.13
SP140-201ENST00000343805 APLP2Q06481 763 aa14.22□□□□□ -0.13
SP140-201ENST00000343805 ERICH6Q7L0X2 663 aa14.2□□□□□ -0.14
SP140-201ENST00000343805 CCDC180Q9P1Z9 1646 aa14.18□□□□□ -0.14
SP140-201ENST00000343805 FOXD1Q16676 465 aa14.17□□□□□ -0.14
SP140-201ENST00000343805 HRCP23327 699 aa14.14□□□□□ -0.15
SP140-201ENST00000343805 TAOK2Q9UL54 1235 aa14.08□□□□□ -0.15
SP140-201ENST00000343805 TIMELESSQ9UNS1 1208 aa14.08□□□□□ -0.15
SP140-201ENST00000343805 MYO15BQ96JP2 1530 aa14.06□□□□□ -0.16
SP140-201ENST00000343805 TPRNQ4KMQ1 711 aa14□□□□□ -0.17
SP140-201ENST00000343805 PLCB2Q00722 1185 aa13.97□□□□□ -0.17
SP140-201ENST00000343805 PCGF6Q9BYE7 350 aa13.97□□□□□ -0.17
SP140-201ENST00000343805 ABCC9O60706 1549 aa13.96□□□□□ -0.17
SP140-201ENST00000343805 HAP1P54257 671 aaPredicted RBP13.94□□□□□ -0.18
SP140-201ENST00000343805 LOC105371045A0A1W2PR82 267 aa13.93□□□□□ -0.18
SP140-201ENST00000343805 BCL11AQ9H165 835 aa13.91□□□□□ -0.18
SP140-201ENST00000343805 SCAF1Q9H7N4 1312 aaKnown RBP13.89□□□□□ -0.19
SP140-201ENST00000343805 TULP1O00294 542 aaPredicted RBP13.89□□□□□ -0.19
SP140-201ENST00000343805 FOXD4L1Q9NU39 408 aa13.87□□□□□ -0.19
SP140-201ENST00000343805 DAXXQ9UER7 740 aaPredicted RBP13.84□□□□□ -0.19
SP140-201ENST00000343805 BCANQ96GW7 911 aa13.75□□□□□ -0.21
SP140-201ENST00000343805 PPARGC1BQ86YN6 1023 aaKnown RBP13.74□□□□□ -0.21
SP140-201ENST00000343805 FBLN2P98095 1184 aa13.72□□□□□ -0.21
SP140-201ENST00000343805 FAM9AQ8IZU1 332 aaPredicted RBP13.71□□□□□ -0.21
SP140-201ENST00000343805 DCAF1Q9Y4B6 1507 aa13.7□□□□□ -0.22
SP140-201ENST00000343805 KDM2AQ9Y2K7 1162 aa13.68□□□□□ -0.22
SP140-201ENST00000343805 SCRIBQ14160 1630 aa13.65□□□□□ -0.22
SP140-201ENST00000343805 PIAS4Q8N2W9 510 aaPredicted RBP13.63□□□□□ -0.23
SP140-201ENST00000343805 TRIM41Q8WV44 630 aa13.61□□□□□ -0.23
SP140-201ENST00000343805 RSF1Q96T23 1441 aaPredicted RBP13.54□□□□□ -0.24
SP140-201ENST00000343805 CENPBP07199 599 aaPredicted RBP13.5□□□□□ -0.25
SP140-201ENST00000343805 TRIM26Q12899 539 aaPredicted RBP13.48□□□□□ -0.25
SP140-201ENST00000343805 MAPK8IP2Q13387 824 aaPredicted RBP13.43□□□□□ -0.26
SP140-201ENST00000343805 RB1CC1Q8TDY2 1594 aa13.42□□□□□ -0.26
SP140-201ENST00000343805 CNKSR2Q8WXI2 1034 aa13.41□□□□□ -0.26
SP140-201ENST00000343805 CECR2Q9BXF3 1484 aa13.4□□□□□ -0.26
SP140-201ENST00000343805 SLC4A2P04920 1241 aa13.39□□□□□ -0.27
SP140-201ENST00000343805 GTF3C3Q9Y5Q9 886 aa13.34□□□□□ -0.27
SP140-201ENST00000343805 ARXQ96QS3 562 aa13.32□□□□□ -0.28
SP140-201ENST00000343805 MROH2BQ7Z745 1585 aa13.29□□□□□ -0.28
SP140-201ENST00000343805 ACIN1Q9UKV3 1341 aaKnown RBP13.29□□□□□ -0.28
SP140-201ENST00000343805 NACADO15069 1562 aa13.27□□□□□ -0.28
SP140-201ENST00000343805 EIF5BO60841 1220 aaKnown RBP13.25□□□□□ -0.29
SP140-201ENST00000343805 ATF5Q9Y2D1 282 aaPredicted RBP13.24□□□□□ -0.29
SP140-201ENST00000343805 VSIG10Q8N0Z9 540 aa13.24□□□□□ -0.29
SP140-201ENST00000343805 PABPN1Q86U42 306 aaKnown RBP eCLIP13.23□□□□□ -0.29
SP140-201ENST00000343805 WIZO95785 1651 aa13.22□□□□□ -0.29
SP140-201ENST00000343805 ANP32EQ9BTT0 268 aa13.22□□□□□ -0.29
SP140-201ENST00000343805 NPM1P06748 294 aaKnown RBP eCLIP13.19□□□□□ -0.3
SP140-201ENST00000343805 CFAP44Q96MT7 982 aa13.18□□□□□ -0.3
SP140-201ENST00000343805 PKD2Q13563 968 aa13.16□□□□□ -0.3
SP140-201ENST00000343805 TSHZ2Q9NRE2 1034 aa13.15□□□□□ -0.3
SP140-201ENST00000343805 PAXIP1Q6ZW49 1069 aaPredicted RBP13.15□□□□□ -0.3
SP140-201ENST00000343805 UNC13AQ9UPW8 1703 aa13.14□□□□□ -0.31
SP140-201ENST00000343805 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.13□□□□□ -0.31
SP140-201ENST00000343805 ZEB1P37275 1124 aaPredicted RBP13.11□□□□□ -0.31
SP140-201ENST00000343805 PODXL2Q9NZ53 605 aa13.09□□□□□ -0.31
SP140-201ENST00000343805 IFNLR1Q8IU57 520 aaPredicted RBP13.09□□□□□ -0.31
SP140-201ENST00000343805 NEUROD1Q13562 356 aa13.07□□□□□ -0.32
SP140-201ENST00000343805 HOMEZQ8IX15 550 aa13.07□□□□□ -0.32
SP140-201ENST00000343805 CCER1Q8TC90 406 aaPredicted RBP13.06□□□□□ -0.32
SP140-201ENST00000343805 UBE2Q2Q8WVN8 375 aa13.06□□□□□ -0.32
SP140-201ENST00000343805 TMEM132AQ24JP5 1023 aa13.06□□□□□ -0.32
SP140-201ENST00000343805 KLHL34Q8N239 644 aa13.05□□□□□ -0.32
SP140-201ENST00000343805 ABCC8Q09428 1581 aa13.04□□□□□ -0.32
SP140-201ENST00000343805 UBTFP17480 764 aaKnown RBP13.03□□□□□ -0.32
SP140-201ENST00000343805 BAZ1AQ9NRL2 1556 aaPredicted RBP13□□□□□ -0.33
SP140-201ENST00000343805 CCDC88BA6NC98 1476 aa12.99□□□□□ -0.33
SP140-201ENST00000343805 RANGAP1P46060 587 aaPredicted RBP12.99□□□□□ -0.33
SP140-201ENST00000343805 BICRAQ9NZM4 1560 aa12.98□□□□□ -0.33
SP140-201ENST00000343805 C14orf37Q86TY3 774 aa12.96□□□□□ -0.33
SP140-201ENST00000343805 SOGA1O94964 1423 aa12.96□□□□□ -0.34
SP140-201ENST00000343805 RUSC2Q8N2Y8 1516 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms