Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 BCL2L2-204ENST00000556599 548 ntTSL 324.63■■□□□ 1.531e-8■□□□□ 8.7
U2AF1Q01081 PLCG1-212ENST00000492148 597 ntTSL 218.29■□□□□ 0.521e-8■□□□□ 8.7
U2AF1Q01081 BCL2L2-PABPN1-202ENST00000556100 655 ntTSL 318.13■□□□□ 0.491e-8■□□□□ 8.7
U2AF1Q01081 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.291e-8■□□□□ 8.7
U2AF1Q01081 EPB41L2-206ENST00000452150 2994 ntTSL 1 (best)9.63□□□□□ -0.871e-8■□□□□ 8.7
U2AF1Q01081 EEF1AKMT2-202ENST00000464099 1013 ntTSL 1 (best)34.53■■■■□ 3.123e-7■□□□□ 8.7
U2AF1Q01081 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.563e-7■□□□□ 8.7
U2AF1Q01081 EEF1AKMT2-203ENST00000466270 3587 ntTSL 1 (best)18.69■□□□□ 0.583e-7■□□□□ 8.7
U2AF1Q01081 AC068896.1-201ENST00000494792 3422 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.143e-7■□□□□ 8.7
U2AF1Q01081 FGL1-207ENST00000518769 318 ntTSL 38.66□□□□□ -1.022e-12■□□□□ 8.7
U2AF1Q01081 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.331e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-222ENST00000497144 598 ntTSL 423.92■■□□□ 1.421e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-203ENST00000411783 915 ntTSL 319.9■□□□□ 0.781e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-204ENST00000416579 895 ntTSL 319.74■□□□□ 0.751e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-207ENST00000461352 3578 ntTSL 1 (best)15.62■□□□□ 0.091e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-206ENST00000450185 2975 ntTSL 215.38■□□□□ 0.051e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-202ENST00000410065 840 ntTSL 1 (best) BASIC15.33■□□□□ 0.041e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-211ENST00000474528 4072 ntTSL 1 (best)15.26■□□□□ 0.031e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-218ENST00000487508 507 ntTSL 414.63□□□□□ -0.071e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-201ENST00000272433 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.071e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-208ENST00000463277 575 ntTSL 414.28□□□□□ -0.121e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-205ENST00000442582 489 ntTSL 314.24□□□□□ -0.131e-6■□□□□ 8.7
U2AF1Q01081 SFXN5-209ENST00000464825 532 ntTSL 411.19□□□□□ -0.621e-6■□□□□ 8.7
U2AF1Q01081 FDFT1-203ENST00000446331 1558 ntTSL 231.27■■■□□ 2.65e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.15e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC27.13■■□□□ 1.935e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC26.74■■□□□ 1.875e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-207ENST00000525607 1773 ntTSL 225.21■■□□□ 1.635e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC23.87■■□□□ 1.415e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC20.5■□□□□ 0.875e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.695e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-215ENST00000529464 932 ntTSL 1 (best)19.1■□□□□ 0.655e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.645e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC18.39■□□□□ 0.535e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-204ENST00000525283 898 ntTSL 316.83■□□□□ 0.285e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-218ENST00000530664 1761 ntTSL 2 BASIC16.66■□□□□ 0.265e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-225ENST00000622850 1987 ntTSL 2 BASIC14.64□□□□□ -0.075e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-212ENST00000528643 1909 ntTSL 2 BASIC10.96□□□□□ -0.655e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC9.23□□□□□ -0.935e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC9.21□□□□□ -0.935e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-213ENST00000528729 570 ntTSL 38.78□□□□□ -15e-31■□□□□ 8.6
U2AF1Q01081 FDFT1-216ENST00000529521 418 ntTSL 23.35□□□□□ -1.875e-31■□□□□ 8.6
U2AF1Q01081 RBM26-206ENST00000472143 2192 ntTSL 233.04■■■□□ 2.886e-6■□□□□ 8.6
U2AF1Q01081 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC29.32■■■□□ 2.286e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.936e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-207ENST00000562155 1757 ntTSL 526.48■■□□□ 1.836e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.786e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC25.98■■□□□ 1.756e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC24.85■■□□□ 1.576e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-202ENST00000316853 1287 ntTSL 1 (best)24.3■■□□□ 1.486e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-215ENST00000566349 1377 ntTSL 223.23■■□□□ 1.316e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-217ENST00000566661 2232 ntTSL 522.5■■□□□ 1.196e-6■□□□□ 8.6
U2AF1Q01081 NAB1-207ENST00000426601 545 ntTSL 420.86■□□□□ 0.936e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-208ENST00000562261 1065 ntTSL 320.32■□□□□ 0.846e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-212ENST00000564396 563 ntTSL 519.27■□□□□ 0.686e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-218ENST00000567298 4572 ntTSL 518.39■□□□□ 0.536e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-226ENST00000569747 560 ntTSL 418.23■□□□□ 0.516e-6■□□□□ 8.6
U2AF1Q01081 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC17.72■□□□□ 0.436e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-214ENST00000565328 582 ntTSL 417.39■□□□□ 0.376e-6■□□□□ 8.6
U2AF1Q01081 UBE2V1-207ENST00000420027 1956 ntTSL 5 BASIC17.05■□□□□ 0.326e-6■□□□□ 8.6
U2AF1Q01081 NAB1-201ENST00000337386 4358 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.116e-6■□□□□ 8.6
U2AF1Q01081 NAB1-203ENST00000409641 2472 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.16e-6■□□□□ 8.6
U2AF1Q01081 NAB1-209ENST00000448811 590 ntTSL 414.9□□□□□ -0.026e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-209ENST00000562872 559 ntTSL 414.83□□□□□ -0.046e-6■□□□□ 8.6
U2AF1Q01081 PLXNA3-201ENST00000369682 10885 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.086e-6■□□□□ 8.6
U2AF1Q01081 DNHD1-219ENST00000533649 2557 ntTSL 1 (best)14.54□□□□□ -0.086e-6■□□□□ 8.6
U2AF1Q01081 BAHCC1-206ENST00000584436 10801 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.096e-6■□□□□ 8.6
U2AF1Q01081 TUBE1-210ENST00000604967 582 ntTSL 514.34□□□□□ -0.116e-6■□□□□ 8.6
U2AF1Q01081 KBTBD2-206ENST00000477129 695 ntTSL 214.05□□□□□ -0.166e-6■□□□□ 8.6
U2AF1Q01081 NAB1-204ENST00000416973 568 ntTSL 414.01□□□□□ -0.176e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-213ENST00000564484 562 ntTSL 514□□□□□ -0.176e-6■□□□□ 8.6
U2AF1Q01081 RBM26-201ENST00000267229 3624 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.266e-6■□□□□ 8.6
U2AF1Q01081 KLHDC4-219ENST00000567513 585 ntTSL 410.24□□□□□ -0.776e-6■□□□□ 8.6
U2AF1Q01081 NAB1-206ENST00000423376 438 ntTSL 49.57□□□□□ -0.886e-6■□□□□ 8.6
U2AF1Q01081 NAB1-205ENST00000423076 542 ntTSL 28.43□□□□□ -1.066e-6■□□□□ 8.6
U2AF1Q01081 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC5.59□□□□□ -1.516e-6■□□□□ 8.6
U2AF1Q01081 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC32.72■■■□□ 2.831e-9■□□□□ 8.6
U2AF1Q01081 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC31.69■■■□□ 2.661e-9■□□□□ 8.6
U2AF1Q01081 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.431e-9■□□□□ 8.6
U2AF1Q01081 NDEL1-217ENST00000583683 1802 ntTSL 224.17■■□□□ 1.461e-9■□□□□ 8.6
U2AF1Q01081 NDEL1-204ENST00000578172 3927 nt17.71■□□□□ 0.431e-9■□□□□ 8.6
U2AF1Q01081 NDEL1-203ENST00000402554 1858 ntTSL 5 BASIC17.19■□□□□ 0.341e-9■□□□□ 8.6
U2AF1Q01081 NDEL1-211ENST00000581679 582 ntTSL 44.61□□□□□ -1.671e-9■□□□□ 8.6
U2AF1Q01081 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.078e-52■□□□□ 8.6
U2AF1Q01081 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.998e-52■□□□□ 8.6
U2AF1Q01081 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.558e-52■□□□□ 8.6
U2AF1Q01081 INS-IGF2-205ENST00000641326 2861 ntAPPRIS P1 BASIC15.57■□□□□ 0.088e-52■□□□□ 8.6
U2AF1Q01081 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.888e-11■□□□□ 8.6
U2AF1Q01081 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC38.65■■■■□ 3.788e-7■□□□□ 8.6
U2AF1Q01081 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC36.04■■■■□ 3.368e-7■□□□□ 8.6
U2AF1Q01081 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC34.63■■■■□ 3.138e-7■□□□□ 8.6
U2AF1Q01081 NKTR-204ENST00000445842 560 ntTSL 531.14■■■□□ 2.584e-10■□□□□ 8.6
U2AF1Q01081 TFG-210ENST00000620299 1289 ntTSL 5 BASIC28.12■■■□□ 2.094e-10■□□□□ 8.6
U2AF1Q01081 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC27.89■■■□□ 2.064e-10■□□□□ 8.6
U2AF1Q01081 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.898e-7■□□□□ 8.6
U2AF1Q01081 EDC4-204ENST00000572221 5267 ntTSL 226.29■■□□□ 1.82e-11■□□□□ 8.6
U2AF1Q01081 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC25.67■■□□□ 1.77e-9■□□□□ 8.6
U2AF1Q01081 NEU1-208ENST00000491768 1875 ntTSL 525.63■■□□□ 1.694e-23■□□□□ 8.6
U2AF1Q01081 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.672e-11■□□□□ 8.6
U2AF1Q01081 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC25.47■■□□□ 1.677e-9■□□□□ 8.6
Retrieved 100 of 10,096 protein–RNA pairs in 379.5 ms