Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK1Q9Y566 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK1Q9Y566 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK1Q9Y566 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.21■■□□□ 1.31
SHANK1Q9Y566 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.21■■□□□ 1.31
SHANK1Q9Y566 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.21■■□□□ 1.31
SHANK1Q9Y566 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
SHANK1Q9Y566 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
SHANK1Q9Y566 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
SHANK1Q9Y566 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.2■■□□□ 1.3
SHANK1Q9Y566 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC23.2■■□□□ 1.3
SHANK1Q9Y566 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
SHANK1Q9Y566 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK1Q9Y566 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.19■■□□□ 1.3
SHANK1Q9Y566 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK1Q9Y566 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK1Q9Y566 AC004987.1-201ENST00000428627 508 ntBASIC23.18■■□□□ 1.3
SHANK1Q9Y566 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.17■■□□□ 1.3
SHANK1Q9Y566 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHANK1Q9Y566 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK1Q9Y566 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
SHANK1Q9Y566 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC23.16■■□□□ 1.3
SHANK1Q9Y566 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK1Q9Y566 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.16■■□□□ 1.3
SHANK1Q9Y566 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.16■■□□□ 1.3
SHANK1Q9Y566 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHANK1Q9Y566 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
SHANK1Q9Y566 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.14■■□□□ 1.3
SHANK1Q9Y566 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.14■■□□□ 1.3
SHANK1Q9Y566 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.14■■□□□ 1.29
SHANK1Q9Y566 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHANK1Q9Y566 ATP5G2P3-201ENST00000429083 425 ntBASIC23.13■■□□□ 1.29
SHANK1Q9Y566 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.13■■□□□ 1.29
SHANK1Q9Y566 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHANK1Q9Y566 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC23.13■■□□□ 1.29
SHANK1Q9Y566 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.13■■□□□ 1.29
SHANK1Q9Y566 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC23.12■■□□□ 1.29
SHANK1Q9Y566 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHANK1Q9Y566 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.11■■□□□ 1.29
SHANK1Q9Y566 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK1Q9Y566 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK1Q9Y566 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK1Q9Y566 MIR219A2-201ENST00000608502 1504 ntBASIC23.1■■□□□ 1.29
SHANK1Q9Y566 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
SHANK1Q9Y566 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SHANK1Q9Y566 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.09■■□□□ 1.29
SHANK1Q9Y566 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.08■■□□□ 1.29
SHANK1Q9Y566 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SHANK1Q9Y566 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.08■■□□□ 1.29
SHANK1Q9Y566 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SHANK1Q9Y566 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SHANK1Q9Y566 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.07■■□□□ 1.28
SHANK1Q9Y566 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SHANK1Q9Y566 AC127502.1-201ENST00000399971 1502 ntBASIC23.07■■□□□ 1.28
SHANK1Q9Y566 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SHANK1Q9Y566 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
SHANK1Q9Y566 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.06■■□□□ 1.28
SHANK1Q9Y566 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SHANK1Q9Y566 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SHANK1Q9Y566 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SHANK1Q9Y566 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SHANK1Q9Y566 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
SHANK1Q9Y566 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SHANK1Q9Y566 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.05■■□□□ 1.28
SHANK1Q9Y566 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SHANK1Q9Y566 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK1Q9Y566 AC110285.7-201ENST00000624417 1536 ntBASIC23.04■■□□□ 1.28
SHANK1Q9Y566 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK1Q9Y566 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SHANK1Q9Y566 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
SHANK1Q9Y566 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK1Q9Y566 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC23.03■■□□□ 1.28
SHANK1Q9Y566 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK1Q9Y566 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.03■■□□□ 1.28
SHANK1Q9Y566 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
SHANK1Q9Y566 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK1Q9Y566 AL157400.5-201ENST00000507624 621 ntBASIC23.03■■□□□ 1.28
SHANK1Q9Y566 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK1Q9Y566 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHANK1Q9Y566 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
SHANK1Q9Y566 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK1Q9Y566 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.02■■□□□ 1.28
SHANK1Q9Y566 AL451085.2-201ENST00000605085 799 ntBASIC23.02■■□□□ 1.28
SHANK1Q9Y566 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK1Q9Y566 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHANK1Q9Y566 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK1Q9Y566 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHANK1Q9Y566 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SHANK1Q9Y566 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SHANK1Q9Y566 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23■■□□□ 1.27
SHANK1Q9Y566 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC23■■□□□ 1.27
SHANK1Q9Y566 MED25-210ENST00000612854 801 ntTSL 5 BASIC22.99■■□□□ 1.27
SHANK1Q9Y566 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SHANK1Q9Y566 MED25-214ENST00000622402 642 ntTSL 5 BASIC22.99■■□□□ 1.27
SHANK1Q9Y566 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SHANK1Q9Y566 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHANK1Q9Y566 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHANK1Q9Y566 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SHANK1Q9Y566 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SHANK1Q9Y566 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms