Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
SEC61A2Q9H9S3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SEC61A2Q9H9S3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC22.61■■□□□ 1.21
SEC61A2Q9H9S3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC22.61■■□□□ 1.21
SEC61A2Q9H9S3 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SEC61A2Q9H9S3 AC135983.2-203ENST00000454486 1613 ntBASIC22.6■■□□□ 1.21
SEC61A2Q9H9S3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SEC61A2Q9H9S3 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SEC61A2Q9H9S3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.6■■□□□ 1.21
SEC61A2Q9H9S3 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SEC61A2Q9H9S3 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SEC61A2Q9H9S3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
SEC61A2Q9H9S3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC22.6■■□□□ 1.21
SEC61A2Q9H9S3 LINC00273-201ENST00000539813 1452 ntBASIC22.6■■□□□ 1.21
SEC61A2Q9H9S3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SEC61A2Q9H9S3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SEC61A2Q9H9S3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
SEC61A2Q9H9S3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SEC61A2Q9H9S3 MIR7108-201ENST00000614319 87 ntBASIC22.59■■□□□ 1.21
SEC61A2Q9H9S3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC22.58■■□□□ 1.21
SEC61A2Q9H9S3 WHAMMP2-203ENST00000563942 1603 ntBASIC22.58■■□□□ 1.21
SEC61A2Q9H9S3 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC22.58■■□□□ 1.21
SEC61A2Q9H9S3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
SEC61A2Q9H9S3 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.58■■□□□ 1.2
SEC61A2Q9H9S3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC22.58■■□□□ 1.2
SEC61A2Q9H9S3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SEC61A2Q9H9S3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
SEC61A2Q9H9S3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SEC61A2Q9H9S3 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SEC61A2Q9H9S3 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.57■■□□□ 1.2
SEC61A2Q9H9S3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SEC61A2Q9H9S3 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SEC61A2Q9H9S3 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.56■■□□□ 1.2
SEC61A2Q9H9S3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SEC61A2Q9H9S3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SEC61A2Q9H9S3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC22.55■■□□□ 1.2
SEC61A2Q9H9S3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SEC61A2Q9H9S3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SEC61A2Q9H9S3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC22.55■■□□□ 1.2
SEC61A2Q9H9S3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC22.55■■□□□ 1.2
SEC61A2Q9H9S3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.54■■□□□ 1.2
SEC61A2Q9H9S3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SEC61A2Q9H9S3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.54■■□□□ 1.2
SEC61A2Q9H9S3 CALM3-209ENST00000597743 577 ntTSL 4 BASIC22.54■■□□□ 1.2
SEC61A2Q9H9S3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SEC61A2Q9H9S3 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
SEC61A2Q9H9S3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.53■■□□□ 1.2
SEC61A2Q9H9S3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC22.53■■□□□ 1.2
SEC61A2Q9H9S3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SEC61A2Q9H9S3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC22.53■■□□□ 1.2
SEC61A2Q9H9S3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
SEC61A2Q9H9S3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SEC61A2Q9H9S3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SEC61A2Q9H9S3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SEC61A2Q9H9S3 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC22.51■■□□□ 1.19
SEC61A2Q9H9S3 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SEC61A2Q9H9S3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SEC61A2Q9H9S3 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SEC61A2Q9H9S3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SEC61A2Q9H9S3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.5■■□□□ 1.19
SEC61A2Q9H9S3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.5■■□□□ 1.19
SEC61A2Q9H9S3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC22.5■■□□□ 1.19
SEC61A2Q9H9S3 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SEC61A2Q9H9S3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC22.5■■□□□ 1.19
SEC61A2Q9H9S3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SEC61A2Q9H9S3 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.49■■□□□ 1.19
SEC61A2Q9H9S3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC22.49■■□□□ 1.19
SEC61A2Q9H9S3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
SEC61A2Q9H9S3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
SEC61A2Q9H9S3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SEC61A2Q9H9S3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SEC61A2Q9H9S3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SEC61A2Q9H9S3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SEC61A2Q9H9S3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SEC61A2Q9H9S3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.19
SEC61A2Q9H9S3 AP002414.2-202ENST00000590929 1450 ntBASIC22.45■■□□□ 1.18
SEC61A2Q9H9S3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SEC61A2Q9H9S3 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SEC61A2Q9H9S3 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC22.44■■□□□ 1.18
SEC61A2Q9H9S3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SEC61A2Q9H9S3 LINC01971-201ENST00000617888 1048 ntBASIC22.44■■□□□ 1.18
SEC61A2Q9H9S3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SEC61A2Q9H9S3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
SEC61A2Q9H9S3 BX255925.1-201ENST00000566954 1854 ntBASIC22.43■■□□□ 1.18
SEC61A2Q9H9S3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SEC61A2Q9H9S3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
SEC61A2Q9H9S3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
SEC61A2Q9H9S3 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SEC61A2Q9H9S3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SEC61A2Q9H9S3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC22.41■■□□□ 1.18
SEC61A2Q9H9S3 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.41■■□□□ 1.18
SEC61A2Q9H9S3 DUX4L11-201ENST00000611504 1267 ntBASIC22.41■■□□□ 1.18
SEC61A2Q9H9S3 DUX4L12-201ENST00000614593 1267 ntBASIC22.41■■□□□ 1.18
SEC61A2Q9H9S3 DUX4L14-201ENST00000621227 1267 ntBASIC22.41■■□□□ 1.18
SEC61A2Q9H9S3 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC22.41■■□□□ 1.18
SEC61A2Q9H9S3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
SEC61A2Q9H9S3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
SEC61A2Q9H9S3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
SEC61A2Q9H9S3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SEC61A2Q9H9S3 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms