Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
PTCHD1Q96NR3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24■■□□□ 1.43
PTCHD1Q96NR3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24■■□□□ 1.43
PTCHD1Q96NR3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24■■□□□ 1.43
PTCHD1Q96NR3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24■■□□□ 1.43
PTCHD1Q96NR3 AC100797.4-201ENST00000631653 1827 ntBASIC24■■□□□ 1.43
PTCHD1Q96NR3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCHD1Q96NR3 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.99■■□□□ 1.43
PTCHD1Q96NR3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.98■■□□□ 1.43
PTCHD1Q96NR3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.98■■□□□ 1.43
PTCHD1Q96NR3 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PTCHD1Q96NR3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTCHD1Q96NR3 MIR639-201ENST00000384974 98 ntBASIC23.97■■□□□ 1.43
PTCHD1Q96NR3 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.97■■□□□ 1.43
PTCHD1Q96NR3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.97■■□□□ 1.43
PTCHD1Q96NR3 AC110285.7-201ENST00000624417 1536 ntBASIC23.97■■□□□ 1.43
PTCHD1Q96NR3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.96■■□□□ 1.43
PTCHD1Q96NR3 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD1Q96NR3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD1Q96NR3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD1Q96NR3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD1Q96NR3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
PTCHD1Q96NR3 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.95■■□□□ 1.42
PTCHD1Q96NR3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PTCHD1Q96NR3 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PTCHD1Q96NR3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
PTCHD1Q96NR3 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
PTCHD1Q96NR3 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.92■■□□□ 1.42
PTCHD1Q96NR3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
PTCHD1Q96NR3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.92■■□□□ 1.42
PTCHD1Q96NR3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
PTCHD1Q96NR3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PTCHD1Q96NR3 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
PTCHD1Q96NR3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.91■■□□□ 1.42
PTCHD1Q96NR3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.91■■□□□ 1.42
PTCHD1Q96NR3 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.9■■□□□ 1.42
PTCHD1Q96NR3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.89■■□□□ 1.42
PTCHD1Q96NR3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
PTCHD1Q96NR3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
PTCHD1Q96NR3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PTCHD1Q96NR3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.88■■□□□ 1.41
PTCHD1Q96NR3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
PTCHD1Q96NR3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PTCHD1Q96NR3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
PTCHD1Q96NR3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PTCHD1Q96NR3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PTCHD1Q96NR3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PTCHD1Q96NR3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.86■■□□□ 1.41
PTCHD1Q96NR3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
PTCHD1Q96NR3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC23.86■■□□□ 1.41
PTCHD1Q96NR3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PTCHD1Q96NR3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PTCHD1Q96NR3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTCHD1Q96NR3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PTCHD1Q96NR3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PTCHD1Q96NR3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PTCHD1Q96NR3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.84■■□□□ 1.41
PTCHD1Q96NR3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
PTCHD1Q96NR3 MIR4449-201ENST00000578365 66 ntBASIC23.84■■□□□ 1.41
PTCHD1Q96NR3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.84■■□□□ 1.41
PTCHD1Q96NR3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PTCHD1Q96NR3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PTCHD1Q96NR3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PTCHD1Q96NR3 AC008813.1-201ENST00000536597 885 ntBASIC23.83■■□□□ 1.41
PTCHD1Q96NR3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.83■■□□□ 1.41
PTCHD1Q96NR3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.83■■□□□ 1.41
PTCHD1Q96NR3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PTCHD1Q96NR3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PTCHD1Q96NR3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTCHD1Q96NR3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PTCHD1Q96NR3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
PTCHD1Q96NR3 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTCHD1Q96NR3 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PTCHD1Q96NR3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTCHD1Q96NR3 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTCHD1Q96NR3 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PTCHD1Q96NR3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTCHD1Q96NR3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTCHD1Q96NR3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
PTCHD1Q96NR3 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PTCHD1Q96NR3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PTCHD1Q96NR3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PTCHD1Q96NR3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PTCHD1Q96NR3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.8■■□□□ 1.4
PTCHD1Q96NR3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
PTCHD1Q96NR3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD1Q96NR3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD1Q96NR3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD1Q96NR3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.78■■□□□ 1.4
PTCHD1Q96NR3 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.78■■□□□ 1.4
PTCHD1Q96NR3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.77■■□□□ 1.4
PTCHD1Q96NR3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
PTCHD1Q96NR3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
PTCHD1Q96NR3 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD1Q96NR3 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
PTCHD1Q96NR3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.76■■□□□ 1.39
PTCHD1Q96NR3 AP002414.2-202ENST00000590929 1450 ntBASIC23.75■■□□□ 1.39
PTCHD1Q96NR3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD1Q96NR3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
PTCHD1Q96NR3 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms