Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PDLIM4P50479 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
PDLIM4P50479 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PDLIM4P50479 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PDLIM4P50479 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.53■■□□□ 1.04
PDLIM4P50479 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.53■■□□□ 1.04
PDLIM4P50479 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PDLIM4P50479 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.52■■□□□ 1.04
PDLIM4P50479 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PDLIM4P50479 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PDLIM4P50479 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDLIM4P50479 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDLIM4P50479 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.51■■□□□ 1.03
PDLIM4P50479 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDLIM4P50479 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
PDLIM4P50479 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PDLIM4P50479 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PDLIM4P50479 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PDLIM4P50479 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.49■■□□□ 1.03
PDLIM4P50479 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PDLIM4P50479 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PDLIM4P50479 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.48■■□□□ 1.03
PDLIM4P50479 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PDLIM4P50479 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PDLIM4P50479 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 AC148477.6-201ENST00000623746 465 ntBASIC21.47■■□□□ 1.03
PDLIM4P50479 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.46■■□□□ 1.03
PDLIM4P50479 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PDLIM4P50479 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PDLIM4P50479 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
PDLIM4P50479 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDLIM4P50479 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.45■■□□□ 1.02
PDLIM4P50479 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDLIM4P50479 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDLIM4P50479 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PDLIM4P50479 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PDLIM4P50479 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDLIM4P50479 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
PDLIM4P50479 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
PDLIM4P50479 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PDLIM4P50479 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.43■■□□□ 1.02
PDLIM4P50479 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
PDLIM4P50479 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDLIM4P50479 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PDLIM4P50479 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDLIM4P50479 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDLIM4P50479 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDLIM4P50479 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PDLIM4P50479 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
PDLIM4P50479 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.41■■□□□ 1.02
PDLIM4P50479 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.41■■□□□ 1.02
PDLIM4P50479 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
PDLIM4P50479 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PDLIM4P50479 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PDLIM4P50479 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PDLIM4P50479 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.4■■□□□ 1.02
PDLIM4P50479 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.4■■□□□ 1.02
PDLIM4P50479 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PDLIM4P50479 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PDLIM4P50479 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.39■■□□□ 1.02
PDLIM4P50479 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.39■■□□□ 1.02
PDLIM4P50479 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
PDLIM4P50479 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
PDLIM4P50479 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
PDLIM4P50479 ABCB10P3-201ENST00000561950 2166 ntBASIC21.38■■□□□ 1.01
PDLIM4P50479 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDLIM4P50479 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.38■■□□□ 1.01
PDLIM4P50479 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDLIM4P50479 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDLIM4P50479 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDLIM4P50479 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.38■■□□□ 1.01
PDLIM4P50479 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.37■■□□□ 1.01
PDLIM4P50479 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.37■■□□□ 1.01
PDLIM4P50479 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDLIM4P50479 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDLIM4P50479 MIR219A2-201ENST00000608502 1504 ntBASIC21.37■■□□□ 1.01
PDLIM4P50479 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDLIM4P50479 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDLIM4P50479 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDLIM4P50479 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
PDLIM4P50479 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
PDLIM4P50479 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.36■■□□□ 1.01
PDLIM4P50479 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
PDLIM4P50479 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDLIM4P50479 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PDLIM4P50479 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
PDLIM4P50479 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PDLIM4P50479 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.35■■□□□ 1.01
PDLIM4P50479 AC060814.1-201ENST00000554326 538 ntBASIC21.35■■□□□ 1.01
PDLIM4P50479 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
PDLIM4P50479 NTF6A-201ENST00000591175 560 ntBASIC21.34■■□□□ 1.01
PDLIM4P50479 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.34■■□□□ 1.01
PDLIM4P50479 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PDLIM4P50479 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
PDLIM4P50479 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
PDLIM4P50479 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms