Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.55■■■□□ 2.48
FOXN1O15353 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
FOXN1O15353 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.55■■■□□ 2.48
FOXN1O15353 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC30.54■■■□□ 2.48
FOXN1O15353 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC30.53■■■□□ 2.48
FOXN1O15353 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
FOXN1O15353 THA1P-201ENST00000590384 1145 ntBASIC30.53■■■□□ 2.48
FOXN1O15353 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
FOXN1O15353 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
FOXN1O15353 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.51■■■□□ 2.47
FOXN1O15353 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.5■■■□□ 2.47
FOXN1O15353 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
FOXN1O15353 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
FOXN1O15353 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC30.49■■■□□ 2.47
FOXN1O15353 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
FOXN1O15353 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.48■■■□□ 2.47
FOXN1O15353 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
FOXN1O15353 AC060814.1-201ENST00000554326 538 ntBASIC30.48■■■□□ 2.47
FOXN1O15353 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.47■■■□□ 2.47
FOXN1O15353 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC30.47■■■□□ 2.47
FOXN1O15353 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
FOXN1O15353 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC30.47■■■□□ 2.47
FOXN1O15353 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
FOXN1O15353 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
FOXN1O15353 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
FOXN1O15353 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.45■■■□□ 2.47
FOXN1O15353 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.45■■■□□ 2.47
FOXN1O15353 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC30.45■■■□□ 2.47
FOXN1O15353 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.45■■■□□ 2.47
FOXN1O15353 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
FOXN1O15353 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
FOXN1O15353 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
FOXN1O15353 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
FOXN1O15353 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.43■■■□□ 2.46
FOXN1O15353 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
FOXN1O15353 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC30.43■■■□□ 2.46
FOXN1O15353 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
FOXN1O15353 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
FOXN1O15353 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.41■■■□□ 2.46
FOXN1O15353 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
FOXN1O15353 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC30.4■■■□□ 2.46
FOXN1O15353 DUX4L18-201ENST00000553347 1267 ntBASIC30.4■■■□□ 2.46
FOXN1O15353 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
FOXN1O15353 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
FOXN1O15353 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
FOXN1O15353 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
FOXN1O15353 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
FOXN1O15353 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
FOXN1O15353 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
FOXN1O15353 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
FOXN1O15353 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.36■■■□□ 2.45
FOXN1O15353 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.36■■■□□ 2.45
FOXN1O15353 AL161658.1-201ENST00000623641 1967 ntBASIC30.36■■■□□ 2.45
FOXN1O15353 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
FOXN1O15353 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
FOXN1O15353 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
FOXN1O15353 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
FOXN1O15353 AC129492.7-201ENST00000622992 756 ntBASIC30.34■■■□□ 2.45
FOXN1O15353 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
FOXN1O15353 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
FOXN1O15353 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
FOXN1O15353 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
FOXN1O15353 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
FOXN1O15353 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.33■■■□□ 2.45
FOXN1O15353 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
FOXN1O15353 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
FOXN1O15353 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC30.32■■■□□ 2.44
FOXN1O15353 AC009299.2-201ENST00000482477 511 ntBASIC30.32■■■□□ 2.44
FOXN1O15353 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
FOXN1O15353 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
FOXN1O15353 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
FOXN1O15353 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
FOXN1O15353 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
FOXN1O15353 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.3■■■□□ 2.44
FOXN1O15353 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC30.29■■■□□ 2.44
FOXN1O15353 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
FOXN1O15353 HES6-204ENST00000409182 863 ntTSL 2 BASIC30.29■■■□□ 2.44
FOXN1O15353 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
FOXN1O15353 LINC00273-201ENST00000539813 1452 ntBASIC30.28■■■□□ 2.44
FOXN1O15353 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
FOXN1O15353 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
FOXN1O15353 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.28■■■□□ 2.44
FOXN1O15353 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
FOXN1O15353 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.27■■■□□ 2.44
FOXN1O15353 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
FOXN1O15353 CHST11-203ENST00000547956 936 ntTSL 2 BASIC30.27■■■□□ 2.44
FOXN1O15353 AC025884.2-201ENST00000553429 711 ntBASIC30.27■■■□□ 2.44
FOXN1O15353 AC092296.2-201ENST00000589470 999 ntBASIC30.27■■■□□ 2.44
FOXN1O15353 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
FOXN1O15353 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
FOXN1O15353 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.26■■■□□ 2.43
FOXN1O15353 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
FOXN1O15353 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.25■■■□□ 2.43
FOXN1O15353 GUSBP5-201ENST00000418136 578 ntBASIC30.25■■■□□ 2.43
FOXN1O15353 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC30.25■■■□□ 2.43
FOXN1O15353 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
FOXN1O15353 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
FOXN1O15353 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
FOXN1O15353 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
FOXN1O15353 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC30.24■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms