Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 PIDD1-209ENST00000531286 1937 ntTSL 226.28■■□□□ 1.81e-7■□□□□ 9.5
U2AF1Q01081 PIDD1-206ENST00000527812 481 ntTSL 321.96■■□□□ 1.111e-7■□□□□ 9.5
U2AF1Q01081 SKA2-209ENST00000583976 570 ntTSL 220.9■□□□□ 0.941e-7■□□□□ 9.5
U2AF1Q01081 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC19.87■□□□□ 0.771e-7■□□□□ 9.5
U2AF1Q01081 SKA2-202ENST00000437036 625 ntTSL 2 BASIC19.65■□□□□ 0.741e-7■□□□□ 9.5
U2AF1Q01081 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.691e-7■□□□□ 9.5
U2AF1Q01081 SKA2-205ENST00000580541 689 ntTSL 3 BASIC19.03■□□□□ 0.641e-7■□□□□ 9.5
U2AF1Q01081 PIDD1-205ENST00000527357 4496 ntTSL 218.26■□□□□ 0.511e-7■□□□□ 9.5
U2AF1Q01081 PIDD1-204ENST00000525028 3175 ntTSL 1 (best)17.89■□□□□ 0.461e-7■□□□□ 9.5
U2AF1Q01081 ACTR3-203ENST00000443297 566 ntTSL 417.68■□□□□ 0.421e-7■□□□□ 9.5
U2AF1Q01081 PIDD1-203ENST00000524486 3917 ntTSL 216.8■□□□□ 0.281e-7■□□□□ 9.5
U2AF1Q01081 PIDD1-210ENST00000534525 3994 ntTSL 216.25■□□□□ 0.191e-7■□□□□ 9.5
U2AF1Q01081 SKA2-206ENST00000581068 595 ntTSL 2 BASIC14.66□□□□□ -0.061e-7■□□□□ 9.5
U2AF1Q01081 SKA2-204ENST00000578519 894 ntTSL 314.57□□□□□ -0.081e-7■□□□□ 9.5
U2AF1Q01081 PTP4A2-206ENST00000489313 1551 ntTSL 214.43□□□□□ -0.11e-7■□□□□ 9.5
U2AF1Q01081 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.191e-7■□□□□ 9.5
U2AF1Q01081 SKA2-208ENST00000583927 533 ntTSL 213.22□□□□□ -0.291e-7■□□□□ 9.5
U2AF1Q01081 PTP4A2-213ENST00000532001 911 ntTSL 511.48□□□□□ -0.571e-7■□□□□ 9.5
U2AF1Q01081 PTP4A2-201ENST00000457805 1032 ntTSL 2 BASIC11.08□□□□□ -0.641e-7■□□□□ 9.5
U2AF1Q01081 SKA2-207ENST00000583380 583 ntTSL 5 BASIC10.72□□□□□ -0.691e-7■□□□□ 9.5
U2AF1Q01081 SKA2-203ENST00000578105 689 ntTSL 2 BASIC10.7□□□□□ -0.71e-7■□□□□ 9.5
U2AF1Q01081 SKA2-201ENST00000330137 2798 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.81e-7■□□□□ 9.5
U2AF1Q01081 PTP4A2-210ENST00000528253 806 ntTSL 59.57□□□□□ -0.881e-7■□□□□ 9.5
U2AF1Q01081 HBS1L-213ENST00000529169 633 ntTSL 38.87□□□□□ -0.991e-7■□□□□ 9.5
U2AF1Q01081 PTP4A2-217ENST00000602683 667 ntTSL 26.26□□□□□ -1.411e-7■□□□□ 9.5
U2AF1Q01081 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.33□□□□□ -1.561e-7■□□□□ 9.5
U2AF1Q01081 PUM1-202ENST00000373741 4242 ntTSL 1 (best) BASIC15.21■□□□□ 0.032e-8■□□□□ 9.5
U2AF1Q01081 PUM1-201ENST00000257075 5360 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.222e-8■□□□□ 9.5
U2AF1Q01081 PUM1-203ENST00000373742 3515 ntTSL 2 BASIC11.59□□□□□ -0.552e-8■□□□□ 9.5
U2AF1Q01081 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC10.47□□□□□ -0.732e-8■□□□□ 9.5
U2AF1Q01081 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC9.98□□□□□ -0.812e-8■□□□□ 9.5
U2AF1Q01081 PUM1-214ENST00000525843 4528 ntTSL 59.28□□□□□ -0.922e-8■□□□□ 9.5
U2AF1Q01081 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC8.89□□□□□ -0.992e-8■□□□□ 9.5
U2AF1Q01081 PUM1-211ENST00000498419 3068 ntTSL 58.76□□□□□ -1.012e-8■□□□□ 9.5
U2AF1Q01081 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC8.33□□□□□ -1.082e-8■□□□□ 9.5
U2AF1Q01081 MACF1-216ENST00000476350 5304 ntTSL 210.54□□□□□ -0.728e-7■□□□□ 9.5
U2AF1Q01081 MACF1-229ENST00000530262 6257 ntTSL 59.15□□□□□ -0.958e-7■□□□□ 9.5
U2AF1Q01081 MACF1-228ENST00000528611 380 ntTSL 38.24□□□□□ -1.098e-7■□□□□ 9.5
U2AF1Q01081 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC7.21□□□□□ -1.258e-7■□□□□ 9.5
U2AF1Q01081 MACF1-205ENST00000372925 14496 ntTSL 57.21□□□□□ -1.258e-7■□□□□ 9.5
U2AF1Q01081 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.93□□□□□ -1.468e-7■□□□□ 9.5
U2AF1Q01081 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.618e-7■□□□□ 9.5
U2AF1Q01081 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.648e-7■□□□□ 9.5
U2AF1Q01081 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.36□□□□□ -1.718e-7■□□□□ 9.5
U2AF1Q01081 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC32.41■■■□□ 2.781e-8■□□□□ 9.4
U2AF1Q01081 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC30.69■■■□□ 2.51e-8■□□□□ 9.4
U2AF1Q01081 DAZAP1-204ENST00000586579 619 ntTSL 330.41■■■□□ 2.461e-8■□□□□ 9.4
U2AF1Q01081 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.321e-8■□□□□ 9.4
U2AF1Q01081 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC28.16■■■□□ 2.11e-8■□□□□ 9.4
U2AF1Q01081 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC27.53■■■□□ 22e-10■□□□□ 9.4
U2AF1Q01081 TPTEP1-202ENST00000400593 1430 ntTSL 1 (best)21.28■■□□□ 12e-10■□□□□ 9.4
U2AF1Q01081 DAZAP1-210ENST00000592453 1021 ntTSL 519.82■□□□□ 0.761e-8■□□□□ 9.4
U2AF1Q01081 DAZAP1-209ENST00000590419 508 ntTSL 319.47■□□□□ 0.711e-6■□□□□ 9.4
U2AF1Q01081 AL662899.3-203ENST00000409691 1903 ntTSL 319.23■□□□□ 0.671e-6■□□□□ 9.4
U2AF1Q01081 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.531e-6■□□□□ 9.4
U2AF1Q01081 TPTEP1-204ENST00000426585 5725 ntTSL 1 (best)16.29■□□□□ 0.22e-10■□□□□ 9.4
U2AF1Q01081 DAZAP1-207ENST00000589484 3414 ntTSL 216.15■□□□□ 0.181e-8■□□□□ 9.4
U2AF1Q01081 AL662899.3-202ENST00000617558 991 ntTSL 1 (best) BASIC15.54■□□□□ 0.081e-6■□□□□ 9.4
U2AF1Q01081 MED6-202ENST00000430055 1507 ntTSL 2 BASIC15.53■□□□□ 0.081e-6■□□□□ 9.4
U2AF1Q01081 LY6G5B-208ENST00000409525 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.041e-6■□□□□ 9.4
U2AF1Q01081 LY6G5B-207ENST00000375864 2654 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.021e-6■□□□□ 9.4
U2AF1Q01081 AL662899.3-201ENST00000375880 2487 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.041e-6■□□□□ 9.4
U2AF1Q01081 DAZAP1-206ENST00000587833 560 ntTSL 513.88□□□□□ -0.191e-6■□□□□ 9.4
U2AF1Q01081 MED6-203ENST00000440435 931 ntTSL 2 BASIC13.8□□□□□ -0.21e-6■□□□□ 9.4
U2AF1Q01081 TPTEP1-201ENST00000383140 971 ntTSL 1 (best)10.63□□□□□ -0.712e-10■□□□□ 9.4
U2AF1Q01081 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.721e-6■□□□□ 9.4
U2AF1Q01081 MED6-212ENST00000615788 1700 ntTSL 5 BASIC9.45□□□□□ -0.91e-6■□□□□ 9.4
U2AF1Q01081 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC8.74□□□□□ -1.011e-6■□□□□ 9.4
U2AF1Q01081 MED6-208ENST00000555296 856 ntTSL 27.52□□□□□ -1.211e-6■□□□□ 9.4
U2AF1Q01081 CD46-211ENST00000464082 567 ntTSL 27.1□□□□□ -1.271e-6■□□□□ 9.4
U2AF1Q01081 GOLGA4-211ENST00000498250 560 ntTSL 26.08□□□□□ -1.441e-6■□□□□ 9.4
U2AF1Q01081 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.61e-6■□□□□ 9.4
U2AF1Q01081 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC25.43■■□□□ 1.664e-6■□□□□ 9.4
U2AF1Q01081 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC20.78■□□□□ 0.924e-6■□□□□ 9.4
U2AF1Q01081 ARHGAP5-204ENST00000432921 5003 ntTSL 5 BASIC12.72□□□□□ -0.374e-6■□□□□ 9.4
U2AF1Q01081 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.254e-6■□□□□ 9.4
U2AF1Q01081 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC6.88□□□□□ -1.314e-6■□□□□ 9.4
U2AF1Q01081 ARHGAP5-207ENST00000554090 543 ntTSL 55.39□□□□□ -1.554e-6■□□□□ 9.4
U2AF1Q01081 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.43□□□□□ -1.864e-6■□□□□ 9.4
U2AF1Q01081 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.626e-6■□□□□ 9.4
U2AF1Q01081 WDR77-203ENST00000459665 637 ntTSL 315.83■□□□□ 0.126e-6■□□□□ 9.4
U2AF1Q01081 WDR77-202ENST00000449340 877 ntTSL 512.1□□□□□ -0.476e-6■□□□□ 9.4
U2AF1Q01081 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.245e-9■□□□□ 9.4
U2AF1Q01081 ANKRD11-204ENST00000378332 1982 ntTSL 227.95■■■□□ 2.075e-9■□□□□ 9.4
U2AF1Q01081 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.995e-9■□□□□ 9.4
U2AF1Q01081 ANKRD11-211ENST00000566973 442 ntTSL 227.16■■□□□ 1.945e-9■□□□□ 9.4
U2AF1Q01081 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.25e-9■□□□□ 9.4
U2AF1Q01081 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.175e-9■□□□□ 9.4
U2AF1Q01081 AJUBA-207ENST00000555479 558 ntTSL 415.72■□□□□ 0.115e-9■□□□□ 9.4
U2AF1Q01081 ANKRD11-207ENST00000562816 573 ntTSL 415.06■□□□□ 05e-9■□□□□ 9.4
U2AF1Q01081 ANKRD11-215ENST00000568512 294 ntTSL 211.95□□□□□ -0.55e-9■□□□□ 9.4
U2AF1Q01081 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC25.7■■□□□ 1.74e-6■□□□□ 9.4
U2AF1Q01081 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC24.28■■□□□ 1.484e-6■□□□□ 9.4
U2AF1Q01081 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC22.49■■□□□ 1.194e-6■□□□□ 9.4
U2AF1Q01081 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC17.51■□□□□ 0.394e-6■□□□□ 9.4
U2AF1Q01081 RTN4-211ENST00000438462 656 ntTSL 514.86□□□□□ -0.034e-6■□□□□ 9.4
U2AF1Q01081 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC11.13□□□□□ -0.634e-6■□□□□ 9.4
U2AF1Q01081 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC8.78□□□□□ -14e-6■□□□□ 9.4
U2AF1Q01081 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.94□□□□□ -1.624e-6■□□□□ 9.4
U2AF1Q01081 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.94□□□□□ -1.624e-6■□□□□ 9.4
Retrieved 100 of 10,096 protein–RNA pairs in 228.2 ms