RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 DCAF8L2P0C7V8 631 aa23.65■■□□□ 1.38
RTN4-202ENST00000337526 NISCHQ9Y2I1 1504 aa23.1■■□□□ 1.29
RTN4-202ENST00000337526 SUPT5HO00267 1087 aaKnown RBP22.86■■□□□ 1.25
RTN4-202ENST00000337526 SHROOM4Q9ULL8 1493 aa22.39■■□□□ 1.18
RTN4-202ENST00000337526 EHMT2Q96KQ7 1210 aa21.96■■□□□ 1.11
RTN4-202ENST00000337526 PCGF6Q9BYE7 350 aa21.62■■□□□ 1.05
RTN4-202ENST00000337526 FAM9AQ8IZU1 332 aaPredicted RBP21.52■■□□□ 1.04
RTN4-202ENST00000337526 PELP1Q8IZL8 1130 aaKnown RBP21.48■■□□□ 1.03
RTN4-202ENST00000337526 APLP2Q06481 763 aa21.44■■□□□ 1.02
RTN4-202ENST00000337526 TTBK1Q5TCY1 1321 aaPredicted RBP21.26■□□□□ 0.99
RTN4-202ENST00000337526 ZEB1P37275 1124 aaPredicted RBP21.14■□□□□ 0.98
RTN4-202ENST00000337526 TRIM41Q8WV44 630 aa21.14■□□□□ 0.97
RTN4-202ENST00000337526 CENPBP07199 599 aaPredicted RBP21.04■□□□□ 0.96
RTN4-202ENST00000337526 CCER1Q8TC90 406 aaPredicted RBP21.03■□□□□ 0.96
RTN4-202ENST00000337526 RANGAP1P46060 587 aaPredicted RBP20.91■□□□□ 0.94
RTN4-202ENST00000337526 UBTFP17480 764 aaKnown RBP20.79■□□□□ 0.92
RTN4-202ENST00000337526 TRIM26Q12899 539 aaPredicted RBP20.68■□□□□ 0.9
RTN4-202ENST00000337526 HRCP23327 699 aa20.67■□□□□ 0.9
RTN4-202ENST00000337526 PPARGC1BQ86YN6 1023 aaKnown RBP20.65■□□□□ 0.9
RTN4-202ENST00000337526 ATP1B4Q9UN42 357 aaPredicted RBP20.62■□□□□ 0.89
RTN4-202ENST00000337526 YTHDC1Q96MU7 727 aaKnown RBP20.59■□□□□ 0.89
RTN4-202ENST00000337526 ERICH6Q7L0X2 663 aa20.56■□□□□ 0.88
RTN4-202ENST00000337526 CHIC1Q5VXU3 224 aa20.55■□□□□ 0.88
RTN4-202ENST00000337526 LOC105371045A0A1W2PR82 267 aa20.52■□□□□ 0.88
RTN4-202ENST00000337526 NEFLP07196 543 aa20.42■□□□□ 0.86
RTN4-202ENST00000337526 MYT1Q01538 1121 aa20.31■□□□□ 0.84
RTN4-202ENST00000337526 ABCC9O60706 1549 aa20.31■□□□□ 0.84
RTN4-202ENST00000337526 HNRNPUL2Q1KMD3 747 aaKnown RBP20.15■□□□□ 0.82
RTN4-202ENST00000337526 ITGAEP38570 1179 aa20.15■□□□□ 0.82
RTN4-202ENST00000337526 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.06■□□□□ 0.8
RTN4-202ENST00000337526 DIEXFQ68CQ4 756 aaKnown RBP19.98■□□□□ 0.79
RTN4-202ENST00000337526 POLR3GLQ9BT43 218 aa19.85■□□□□ 0.77
RTN4-202ENST00000337526 CNGB1Q14028 1251 aaPredicted RBP19.74■□□□□ 0.75
RTN4-202ENST00000337526 PABPN1Q86U42 306 aaKnown RBP eCLIP19.74■□□□□ 0.75
RTN4-202ENST00000337526 DAXXQ9UER7 740 aaPredicted RBP19.69■□□□□ 0.74
RTN4-202ENST00000337526 GTF3C3Q9Y5Q9 886 aa19.65■□□□□ 0.74
RTN4-202ENST00000337526 FAM50AQ14320 339 aaKnown RBP19.6■□□□□ 0.73
RTN4-202ENST00000337526 MYT1LQ9UL68 1186 aa19.59■□□□□ 0.73
RTN4-202ENST00000337526 NEUROD1Q13562 356 aa19.52■□□□□ 0.72
RTN4-202ENST00000337526 CCDC180Q9P1Z9 1646 aa19.52■□□□□ 0.71
RTN4-202ENST00000337526 ZNF316A6NFI3 1004 aaPredicted RBP19.5■□□□□ 0.71
RTN4-202ENST00000337526 BCANQ96GW7 911 aa19.44■□□□□ 0.7
RTN4-202ENST00000337526 TRIM52Q96A61 297 aa19.44■□□□□ 0.7
RTN4-202ENST00000337526 ACIN1Q9UKV3 1341 aaKnown RBP19.41■□□□□ 0.7
RTN4-202ENST00000337526 RTL5Q5HYW3 569 aaPredicted RBP19.39■□□□□ 0.69
RTN4-202ENST00000337526 ANP32CO43423 234 aa19.37■□□□□ 0.69
RTN4-202ENST00000337526 CSRNP3Q8WYN3 585 aa19.37■□□□□ 0.69
RTN4-202ENST00000337526 CLSPNQ9HAW4 1339 aa19.31■□□□□ 0.68
RTN4-202ENST00000337526 SLC4A1APQ9BWU0 796 aaKnown RBP19.3■□□□□ 0.68
RTN4-202ENST00000337526 CDK11AQ9UQ88 783 aaPredicted RBP19.23■□□□□ 0.67
RTN4-202ENST00000337526 ZNF326Q5BKZ1 582 aaKnown RBP19.22■□□□□ 0.67
RTN4-202ENST00000337526 DCAF1Q9Y4B6 1507 aa19.19■□□□□ 0.66
RTN4-202ENST00000337526 P3H3Q8IVL6 736 aa19.14■□□□□ 0.65
RTN4-202ENST00000337526 RB1CC1Q8TDY2 1594 aa19.11■□□□□ 0.65
RTN4-202ENST00000337526 ZCCHC6Q5VYS8 1495 aaKnown RBP19.09■□□□□ 0.65
RTN4-202ENST00000337526 SCRIBQ14160 1630 aa19.02■□□□□ 0.64
RTN4-202ENST00000337526 ARID3CA6NKF2 412 aa18.98■□□□□ 0.63
RTN4-202ENST00000337526 FBLN2P98095 1184 aa18.98■□□□□ 0.63
RTN4-202ENST00000337526 FKBP8Q14318 412 aa18.96■□□□□ 0.63
RTN4-202ENST00000337526 NACADO15069 1562 aa18.95■□□□□ 0.62
RTN4-202ENST00000337526 DDX10Q13206 875 aaKnown RBP18.94■□□□□ 0.62
RTN4-202ENST00000337526 TONSLQ96HA7 1378 aa18.89■□□□□ 0.61
RTN4-202ENST00000337526 ANP32AP39687 249 aaKnown RBP18.88■□□□□ 0.61
RTN4-202ENST00000337526 SCAF1Q9H7N4 1312 aaKnown RBP18.88■□□□□ 0.61
RTN4-202ENST00000337526 HNRNPUQ00839 825 aaKnown RBP eCLIP18.87■□□□□ 0.613e-6■□□□□ 10
RTN4-202ENST00000337526 ZNF777Q9ULD5 760 aaPredicted RBP18.85■□□□□ 0.61
RTN4-202ENST00000337526 CANXP27824 592 aaKnown RBP18.84■□□□□ 0.61
RTN4-202ENST00000337526 MIER1Q8N108 512 aa18.82■□□□□ 0.6
RTN4-202ENST00000337526 ZBTB47Q9UFB7 747 aaPredicted RBP18.81■□□□□ 0.6
RTN4-202ENST00000337526 MYO15BQ96JP2 1530 aa18.81■□□□□ 0.6
RTN4-202ENST00000337526 NPM2Q86SE8 214 aaKnown RBP18.78■□□□□ 0.6
RTN4-202ENST00000337526 FAM9BQ8IZU0 186 aa18.78■□□□□ 0.6
RTN4-202ENST00000337526 BCL11AQ9H165 835 aa18.73■□□□□ 0.59
RTN4-202ENST00000337526 NEFMP07197 916 aa18.68■□□□□ 0.58
RTN4-202ENST00000337526 CHIC2Q9UKJ5 165 aa18.68■□□□□ 0.58
RTN4-202ENST00000337526 CLIP1P30622 1438 aa18.66■□□□□ 0.58
RTN4-202ENST00000337526 SALL2Q9Y467 1007 aaPredicted RBP18.64■□□□□ 0.57
RTN4-202ENST00000337526 HIRIP3Q9BW71 556 aaPredicted RBP18.64■□□□□ 0.57
RTN4-202ENST00000337526 TMC1Q8TDI8 760 aa18.62■□□□□ 0.57
RTN4-202ENST00000337526 CCDC136Q96JN2 1154 aa18.62■□□□□ 0.57
RTN4-202ENST00000337526 MRS2Q9HD23 443 aa18.61■□□□□ 0.57
RTN4-202ENST00000337526 RSF1Q96T23 1441 aaPredicted RBP18.59■□□□□ 0.57
RTN4-202ENST00000337526 SLC24A1O60721 1099 aa18.57■□□□□ 0.56
RTN4-202ENST00000337526 CEP162Q5TB80 1403 aa18.56■□□□□ 0.56
RTN4-202ENST00000337526 MTUS2Q5JR59 1369 aa18.55■□□□□ 0.56
RTN4-202ENST00000337526 IRX6P78412 446 aaPredicted RBP18.54■□□□□ 0.56
RTN4-202ENST00000337526 EEA1Q15075 1411 aa18.51■□□□□ 0.55
RTN4-202ENST00000337526 EIF4G2P78344 907 aaKnown RBP eCLIP18.49■□□□□ 0.559e-7■■■■□ 19.9
RTN4-202ENST00000337526 CHGAP10645 457 aaKnown RBP18.49■□□□□ 0.55
RTN4-202ENST00000337526 NBR1Q14596 966 aa18.48■□□□□ 0.55
RTN4-202ENST00000337526 UPF2Q9HAU5 1272 aaKnown RBP18.48■□□□□ 0.55
RTN4-202ENST00000337526 KDM2AQ9Y2K7 1162 aa18.47■□□□□ 0.55
RTN4-202ENST00000337526 GOLGA3Q08378 1498 aa18.47■□□□□ 0.55
RTN4-202ENST00000337526 TSPY4P0CV99 314 aa18.46■□□□□ 0.55
RTN4-202ENST00000337526 TSPY10P0CW01 314 aa18.46■□□□□ 0.55
RTN4-202ENST00000337526 EIF5BO60841 1220 aaKnown RBP18.46■□□□□ 0.55
RTN4-202ENST00000337526 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.45■□□□□ 0.54
RTN4-202ENST00000337526 HSP90AA1P07900 732 aaKnown RBP18.44■□□□□ 0.54
RTN4-202ENST00000337526 RRP7BPQ9NSQ0 103 aa18.43■□□□□ 0.54
RTN4-202ENST00000337526 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms