RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 NISCHQ9Y2I1 1504 aa17.96■□□□□ 0.47
RTN4-206ENST00000394611 CCDC180Q9P1Z9 1646 aa15.77■□□□□ 0.11
RTN4-206ENST00000394611 ABCC9O60706 1549 aa15.31■□□□□ 0.04
RTN4-206ENST00000394611 DCAF8L2P0C7V8 631 aa15.07■□□□□ 0
RTN4-206ENST00000394611 SUPT5HO00267 1087 aaKnown RBP15.07■□□□□ 0
RTN4-206ENST00000394611 ZCCHC6Q5VYS8 1495 aaKnown RBP15.01□□□□□ -0.01
RTN4-206ENST00000394611 SHROOM4Q9ULL8 1493 aa14.97□□□□□ -0.01
RTN4-206ENST00000394611 DCAF1Q9Y4B6 1507 aa14.79□□□□□ -0.04
RTN4-206ENST00000394611 PCGF6Q9BYE7 350 aa14.77□□□□□ -0.04
RTN4-206ENST00000394611 NACADO15069 1562 aa14.77□□□□□ -0.04
RTN4-206ENST00000394611 RB1CC1Q8TDY2 1594 aa14.74□□□□□ -0.05
RTN4-206ENST00000394611 MYO15BQ96JP2 1530 aa14.72□□□□□ -0.05
RTN4-206ENST00000394611 EHMT2Q96KQ7 1210 aa14.7□□□□□ -0.06
RTN4-206ENST00000394611 PPARGC1BQ86YN6 1023 aaKnown RBP14.66□□□□□ -0.06
RTN4-206ENST00000394611 SCRIBQ14160 1630 aa14.54□□□□□ -0.08
RTN4-206ENST00000394611 UNC13AQ9UPW8 1703 aa14.47□□□□□ -0.09
RTN4-206ENST00000394611 PABPN1Q86U42 306 aaKnown RBP eCLIP14.41□□□□□ -0.1
RTN4-206ENST00000394611 HRCP23327 699 aa14.35□□□□□ -0.11
RTN4-206ENST00000394611 BICRAQ9NZM4 1560 aa14.33□□□□□ -0.12
RTN4-206ENST00000394611 TTBK1Q5TCY1 1321 aaPredicted RBP14.23□□□□□ -0.13
RTN4-206ENST00000394611 FAM9AQ8IZU1 332 aaPredicted RBP14.21□□□□□ -0.13
RTN4-206ENST00000394611 LOC105371045A0A1W2PR82 267 aa14.14□□□□□ -0.15
RTN4-206ENST00000394611 CECR2Q9BXF3 1484 aa14.04□□□□□ -0.16
RTN4-206ENST00000394611 YTHDC1Q96MU7 727 aaKnown RBP13.96□□□□□ -0.17
RTN4-206ENST00000394611 EIF4G1Q04637 1599 aaKnown RBP13.92□□□□□ -0.18
RTN4-206ENST00000394611 CHIC1Q5VXU3 224 aa13.91□□□□□ -0.18
RTN4-206ENST00000394611 MROH2BQ7Z745 1585 aa13.9□□□□□ -0.18
RTN4-206ENST00000394611 BAZ1AQ9NRL2 1556 aaPredicted RBP13.88□□□□□ -0.19
RTN4-206ENST00000394611 SMARCA4P51532 1647 aa13.88□□□□□ -0.19
RTN4-206ENST00000394611 DNAJC5BQ9UF47 199 aa13.83□□□□□ -0.19
RTN4-206ENST00000394611 RSF1Q96T23 1441 aaPredicted RBP13.83□□□□□ -0.2
RTN4-206ENST00000394611 PELP1Q8IZL8 1130 aaKnown RBP13.82□□□□□ -0.2
RTN4-206ENST00000394611 CC2D2AQ9P2K1 1620 aa13.81□□□□□ -0.2
RTN4-206ENST00000394611 WIZO95785 1651 aa13.78□□□□□ -0.2
RTN4-206ENST00000394611 CCER1Q8TC90 406 aaPredicted RBP13.76□□□□□ -0.21
RTN4-206ENST00000394611 ATAD2BQ9ULI0 1458 aa13.73□□□□□ -0.21
RTN4-206ENST00000394611 TRIM26Q12899 539 aaPredicted RBP13.72□□□□□ -0.21
RTN4-206ENST00000394611 SCAF1Q9H7N4 1312 aaKnown RBP13.72□□□□□ -0.21
RTN4-206ENST00000394611 SMARCA2P51531 1590 aa13.69□□□□□ -0.22
RTN4-206ENST00000394611 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.68□□□□□ -0.22
RTN4-206ENST00000394611 PEG3Q9GZU2 1588 aa13.68□□□□□ -0.22
RTN4-206ENST00000394611 NCAPD3P42695 1498 aa13.65□□□□□ -0.22
RTN4-206ENST00000394611 BAZ1BQ9UIG0 1483 aaKnown RBP13.65□□□□□ -0.22
RTN4-206ENST00000394611 GTF3C3Q9Y5Q9 886 aa13.64□□□□□ -0.23
RTN4-206ENST00000394611 CENPBP07199 599 aaPredicted RBP13.61□□□□□ -0.23
RTN4-206ENST00000394611 RANGAP1P46060 587 aaPredicted RBP13.6□□□□□ -0.23
RTN4-206ENST00000394611 HMGXB3Q12766 1538 aa13.59□□□□□ -0.23
RTN4-206ENST00000394611 TRIM41Q8WV44 630 aa13.58□□□□□ -0.23
RTN4-206ENST00000394611 TOP2AP11388 1531 aaKnown RBP13.58□□□□□ -0.24
RTN4-206ENST00000394611 ZEB1P37275 1124 aaPredicted RBP13.54□□□□□ -0.24
RTN4-206ENST00000394611 NEUROD1Q13562 356 aa13.5□□□□□ -0.25
RTN4-206ENST00000394611 CCDC88BA6NC98 1476 aa13.47□□□□□ -0.25
RTN4-206ENST00000394611 DIEXFQ68CQ4 756 aaKnown RBP13.44□□□□□ -0.26
RTN4-206ENST00000394611 ACIN1Q9UKV3 1341 aaKnown RBP13.39□□□□□ -0.27
RTN4-206ENST00000394611 NESP48681 1621 aa13.34□□□□□ -0.27
RTN4-206ENST00000394611 CADPSQ9ULU8 1353 aa13.3□□□□□ -0.28
RTN4-206ENST00000394611 HNRNPUL2Q1KMD3 747 aaKnown RBP13.29□□□□□ -0.28
RTN4-206ENST00000394611 BCANQ96GW7 911 aa13.29□□□□□ -0.28
RTN4-206ENST00000394611 CFTRP13569 1480 aa13.27□□□□□ -0.29
RTN4-206ENST00000394611 LAMC3Q9Y6N6 1575 aa13.23□□□□□ -0.29
RTN4-206ENST00000394611 UBTFP17480 764 aaKnown RBP13.21□□□□□ -0.3
RTN4-206ENST00000394611 MYT1Q01538 1121 aa13.21□□□□□ -0.3
RTN4-206ENST00000394611 FANCD2Q9BXW9 1451 aa13.16□□□□□ -0.3
RTN4-206ENST00000394611 PDS5BQ9NTI5 1447 aa13.16□□□□□ -0.3
RTN4-206ENST00000394611 PRDM2Q13029 1718 aa13.16□□□□□ -0.3
RTN4-206ENST00000394611 KIF21AQ7Z4S6 1674 aa13.15□□□□□ -0.3
RTN4-206ENST00000394611 ERCC6Q03468 1493 aa13.14□□□□□ -0.31
RTN4-206ENST00000394611 ABCC8Q09428 1581 aa13.12□□□□□ -0.31
RTN4-206ENST00000394611 APLP2Q06481 763 aa13.11□□□□□ -0.31
RTN4-206ENST00000394611 ITGAEP38570 1179 aa13.1□□□□□ -0.31
RTN4-206ENST00000394611 CEP164Q9UPV0 1460 aa13.1□□□□□ -0.31
RTN4-206ENST00000394611 ERICH6Q7L0X2 663 aa13.05□□□□□ -0.32
RTN4-206ENST00000394611 WRNQ14191 1432 aaPredicted RBP eCLIP13.03□□□□□ -0.32
RTN4-206ENST00000394611 CNGB1Q14028 1251 aaPredicted RBP13.02□□□□□ -0.32
RTN4-206ENST00000394611 URB2Q14146 1524 aaKnown RBP13.02□□□□□ -0.32
RTN4-206ENST00000394611 MIER1Q8N108 512 aa13.02□□□□□ -0.33
RTN4-206ENST00000394611 MRC2Q9UBG0 1479 aa13.01□□□□□ -0.33
RTN4-206ENST00000394611 CUX1P39880 1505 aa13.01□□□□□ -0.33
RTN4-206ENST00000394611 SYNJ1O43426 1573 aa13□□□□□ -0.33
RTN4-206ENST00000394611 THOC2Q8NI27 1593 aaKnown RBP12.99□□□□□ -0.33
RTN4-206ENST00000394611 TOPBP1Q92547 1522 aa12.98□□□□□ -0.33
RTN4-206ENST00000394611 ZNF316A6NFI3 1004 aaPredicted RBP12.97□□□□□ -0.33
RTN4-206ENST00000394611 DNMBPQ6XZF7 1577 aa12.96□□□□□ -0.33
RTN4-206ENST00000394611 WDR62O43379 1518 aa12.94□□□□□ -0.34
RTN4-206ENST00000394611 TOP2BQ02880 1626 aa12.93□□□□□ -0.34
RTN4-206ENST00000394611 FGD5Q6ZNL6 1462 aa12.92□□□□□ -0.34
RTN4-206ENST00000394611 BIVM-ERCC5R4GMW8 1640 aa12.92□□□□□ -0.34
RTN4-206ENST00000394611 ATP1B4Q9UN42 357 aaPredicted RBP12.91□□□□□ -0.34
RTN4-206ENST00000394611 POLA1P09884 1462 aaPredicted RBP12.9□□□□□ -0.34
RTN4-206ENST00000394611 NEFLP07196 543 aa12.89□□□□□ -0.35
RTN4-206ENST00000394611 RAD54L2Q9Y4B4 1467 aa12.89□□□□□ -0.35
RTN4-206ENST00000394611 CUX2O14529 1486 aa12.87□□□□□ -0.35
RTN4-206ENST00000394611 SOGA1O94964 1423 aa12.86□□□□□ -0.35
RTN4-206ENST00000394611 TARBP1Q13395 1621 aaKnown RBP12.8□□□□□ -0.36
RTN4-206ENST00000394611 TDRD9Q8NDG6 1382 aaKnown RBP12.8□□□□□ -0.36
RTN4-206ENST00000394611 ZNF608Q9ULD9 1512 aaPredicted RBP12.79□□□□□ -0.36
RTN4-206ENST00000394611 IFT140Q96RY7 1462 aa12.79□□□□□ -0.36
RTN4-206ENST00000394611 RUSC2Q8N2Y8 1516 aa12.78□□□□□ -0.36
RTN4-206ENST00000394611 FKBP8Q14318 412 aa12.78□□□□□ -0.36
RTN4-206ENST00000394611 AQRO60306 1485 aaKnown RBP eCLIP12.77□□□□□ -0.377e-8■■■■■ 28.3
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms