RNA–Protein interactions for RNA: ENST00000438462.1

RTN4-211, Transcript of reticulon 4, humanhuman

TSL 5

Gene RTN4, Length 656 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-211ENST00000438462 NISCHQ9Y2I1 1504 aa30.03■■■□□ 2.4
RTN4-211ENST00000438462 ABCC9O60706 1549 aa29.24■■■□□ 2.27
RTN4-211ENST00000438462 DNAJC5BQ9UF47 199 aa28.77■■■□□ 2.2
RTN4-211ENST00000438462 CCDC180Q9P1Z9 1646 aa27.73■■■□□ 2.03
RTN4-211ENST00000438462 DNAJC5Q9H3Z4 198 aa27.54■■■□□ 2
RTN4-211ENST00000438462 RB1CC1Q8TDY2 1594 aa27.12■■□□□ 1.93
RTN4-211ENST00000438462 PABPN1Q86U42 306 aaKnown RBP eCLIP26.9■■□□□ 1.9
RTN4-211ENST00000438462 UNC13AQ9UPW8 1703 aa26.62■■□□□ 1.85
RTN4-211ENST00000438462 NACADO15069 1562 aa26.51■■□□□ 1.83
RTN4-211ENST00000438462 CECR2Q9BXF3 1484 aa26.49■■□□□ 1.83
RTN4-211ENST00000438462 BICRAQ9NZM4 1560 aa26.43■■□□□ 1.82
RTN4-211ENST00000438462 CC2D2AQ9P2K1 1620 aa26.36■■□□□ 1.81
RTN4-211ENST00000438462 DCAF8L2P0C7V8 631 aa25.93■■□□□ 1.74
RTN4-211ENST00000438462 EIF4G1Q04637 1599 aaKnown RBP25.9■■□□□ 1.74
RTN4-211ENST00000438462 CUX2O14529 1486 aa25.84■■□□□ 1.73
RTN4-211ENST00000438462 SHROOM4Q9ULL8 1493 aa25.84■■□□□ 1.73
RTN4-211ENST00000438462 TRIM41Q8WV44 630 aa25.74■■□□□ 1.71
RTN4-211ENST00000438462 MYO15BQ96JP2 1530 aa25.58■■□□□ 1.69
RTN4-211ENST00000438462 ERCC6Q03468 1493 aa25.35■■□□□ 1.65
RTN4-211ENST00000438462 SCRIBQ14160 1630 aa25.19■■□□□ 1.62
RTN4-211ENST00000438462 THOC2Q8NI27 1593 aaKnown RBP24.81■■□□□ 1.56
RTN4-211ENST00000438462 DCAF1Q9Y4B6 1507 aa24.68■■□□□ 1.54
RTN4-211ENST00000438462 NESP48681 1621 aa24.68■■□□□ 1.54
RTN4-211ENST00000438462 AEBP2Q6ZN18 517 aaPredicted RBP24.59■■□□□ 1.53
RTN4-211ENST00000438462 ZCCHC6Q5VYS8 1495 aaKnown RBP24.58■■□□□ 1.53
RTN4-211ENST00000438462 SMARCA2P51531 1590 aa24.51■■□□□ 1.51
RTN4-211ENST00000438462 BAZ1AQ9NRL2 1556 aaPredicted RBP24.48■■□□□ 1.51
RTN4-211ENST00000438462 NCAPD3P42695 1498 aa24.45■■□□□ 1.51
RTN4-211ENST00000438462 KIF21AQ7Z4S6 1674 aa24.38■■□□□ 1.49
RTN4-211ENST00000438462 RIMBP3CA6NJZ7 1639 aa24.33■■□□□ 1.49
RTN4-211ENST00000438462 RIMBP3BA6NNM3 1639 aa24.33■■□□□ 1.49
RTN4-211ENST00000438462 RIMBP3Q9UFD9 1639 aa24.33■■□□□ 1.49
RTN4-211ENST00000438462 OSCARQ8IYS5 282 aa24.26■■□□□ 1.47
RTN4-211ENST00000438462 LAMC3Q9Y6N6 1575 aa24.23■■□□□ 1.47
RTN4-211ENST00000438462 HMGXB3Q12766 1538 aa24.2■■□□□ 1.47
RTN4-211ENST00000438462 ATAD2BQ9ULI0 1458 aa24.19■■□□□ 1.46
RTN4-211ENST00000438462 TRHP20396 242 aaPredicted RBP24.12■■□□□ 1.45
RTN4-211ENST00000438462 PDS5BQ9NTI5 1447 aa24.07■■□□□ 1.44
RTN4-211ENST00000438462 WDR62O43379 1518 aa24.05■■□□□ 1.44
RTN4-211ENST00000438462 ARHGEF11O15085 1522 aa24.05■■□□□ 1.44
RTN4-211ENST00000438462 MRC2Q9UBG0 1479 aa24.03■■□□□ 1.44
RTN4-211ENST00000438462 BAZ1BQ9UIG0 1483 aaKnown RBP23.89■■□□□ 1.42
RTN4-211ENST00000438462 ILDR1Q86SU0 546 aaPredicted RBP23.89■■□□□ 1.41
RTN4-211ENST00000438462 CYB5RLQ6IPT4 315 aa23.85■■□□□ 1.41
RTN4-211ENST00000438462 SMARCA4P51532 1647 aa23.83■■□□□ 1.41
RTN4-211ENST00000438462 ARAP1Q96P48 1450 aa23.7■■□□□ 1.38
RTN4-211ENST00000438462 CADPSQ9ULU8 1353 aa23.62■■□□□ 1.37
RTN4-211ENST00000438462 CEP164Q9UPV0 1460 aa23.62■■□□□ 1.37
RTN4-211ENST00000438462 PEG3Q9GZU2 1588 aa23.57■■□□□ 1.36
RTN4-211ENST00000438462 FANCD2Q9BXW9 1451 aa23.43■■□□□ 1.34
RTN4-211ENST00000438462 URB2Q14146 1524 aaKnown RBP23.36■■□□□ 1.33
RTN4-211ENST00000438462 CHD1O14646 1710 aa23.34■■□□□ 1.33
RTN4-211ENST00000438462 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.33
RTN4-211ENST00000438462 ZNF608Q9ULD9 1512 aaPredicted RBP23.33■■□□□ 1.33
RTN4-211ENST00000438462 EIF4G3O43432 1585 aaKnown RBP23.19■■□□□ 1.3
RTN4-211ENST00000438462 IFT140Q96RY7 1462 aa23.17■■□□□ 1.3
RTN4-211ENST00000438462 MROH2BQ7Z745 1585 aa23.14■■□□□ 1.3
RTN4-211ENST00000438462 CFTRP13569 1480 aa23.05■■□□□ 1.28
RTN4-211ENST00000438462 FBLN2P98095 1184 aa22.99■■□□□ 1.27
RTN4-211ENST00000438462 CLASP1Q7Z460 1538 aa22.98■■□□□ 1.27
RTN4-211ENST00000438462 KDM4FA0A1W2PPD8 638 aa22.94■■□□□ 1.26
RTN4-211ENST00000438462 AQRO60306 1485 aaKnown RBP eCLIP22.88■■□□□ 1.258e-8■■■■■ 28.3
RTN4-211ENST00000438462 PRDM2Q13029 1718 aa22.84■■□□□ 1.25
RTN4-211ENST00000438462 WIZO95785 1651 aa22.84■■□□□ 1.25
RTN4-211ENST00000438462 KIF13AQ9H1H9 1805 aa22.82■■□□□ 1.24
RTN4-211ENST00000438462 GAPVD1Q14C86 1478 aa22.82■■□□□ 1.24
RTN4-211ENST00000438462 TOPBP1Q92547 1522 aa22.82■■□□□ 1.24
RTN4-211ENST00000438462 ERCC6L2Q5T890 1561 aa22.81■■□□□ 1.24
RTN4-211ENST00000438462 SYNJ1O43426 1573 aa22.8■■□□□ 1.24
RTN4-211ENST00000438462 TARBP1Q13395 1621 aaKnown RBP22.76■■□□□ 1.23
RTN4-211ENST00000438462 HECW2Q9P2P5 1572 aa22.72■■□□□ 1.23
RTN4-211ENST00000438462 FBXO41Q8TF61 875 aa22.67■■□□□ 1.22
RTN4-211ENST00000438462 LMTK3Q96Q04 1460 aa22.66■■□□□ 1.22
RTN4-211ENST00000438462 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
RTN4-211ENST00000438462 DNMBPQ6XZF7 1577 aa22.61■■□□□ 1.21
RTN4-211ENST00000438462 KDM6BO15054 1643 aa22.57■■□□□ 1.2
RTN4-211ENST00000438462 ABCC8Q09428 1581 aa22.57■■□□□ 1.2
RTN4-211ENST00000438462 CHMP7Q8WUX9 453 aaPredicted RBP22.54■■□□□ 1.2
RTN4-211ENST00000438462 MAGI1Q96QZ7 1491 aaPredicted RBP22.48■■□□□ 1.19
RTN4-211ENST00000438462 POLA1P09884 1462 aaPredicted RBP22.47■■□□□ 1.19
RTN4-211ENST00000438462 ADGRL1O94910 1474 aa22.47■■□□□ 1.19
RTN4-211ENST00000438462 TDRD9Q8NDG6 1382 aaKnown RBP22.46■■□□□ 1.19
RTN4-211ENST00000438462 SOCS7O14512 581 aa22.45■■□□□ 1.18
RTN4-211ENST00000438462 SYNJ2O15056 1496 aa22.43■■□□□ 1.18
RTN4-211ENST00000438462 RAD54L2Q9Y4B4 1467 aa22.42■■□□□ 1.18
RTN4-211ENST00000438462 TOP2AP11388 1531 aaKnown RBP22.41■■□□□ 1.18
RTN4-211ENST00000438462 WDR97A6NE52 1622 aa22.39■■□□□ 1.18
RTN4-211ENST00000438462 ABCC10Q5T3U5 1492 aa22.37■■□□□ 1.17
RTN4-211ENST00000438462 FAM69CQ0P6D2 419 aa22.36■■□□□ 1.17
RTN4-211ENST00000438462 ILDR2Q71H61 639 aa22.35■■□□□ 1.17
RTN4-211ENST00000438462 DIP2BQ9P265 1576 aa22.34■■□□□ 1.17
RTN4-211ENST00000438462 GRIN2BQ13224 1484 aa22.3■■□□□ 1.16
RTN4-211ENST00000438462 CEP170Q5SW79 1584 aa22.29■■□□□ 1.16
RTN4-211ENST00000438462 TSPOAP1O95153 1857 aa22.28■■□□□ 1.16
RTN4-211ENST00000438462 SOGA1O94964 1423 aa22.28■■□□□ 1.16
RTN4-211ENST00000438462 PBRM1Q86U86 1689 aa22.24■■□□□ 1.15
RTN4-211ENST00000438462 MAPKBP1O60336 1514 aa22.2■■□□□ 1.14
RTN4-211ENST00000438462 DISP3Q9P2K9 1392 aa22.17■■□□□ 1.14
RTN4-211ENST00000438462 SHROOM2Q13796 1616 aa22.17■■□□□ 1.14
RTN4-211ENST00000438462 CCDC88BA6NC98 1476 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms