RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 NISCHQ9Y2I1 1504 aa8.41□□□□□ -1.06
RTN4-208ENST00000404909 CCDC180Q9P1Z9 1646 aa7.3□□□□□ -1.24
RTN4-208ENST00000404909 DCAF8L2P0C7V8 631 aa7.1□□□□□ -1.27
RTN4-208ENST00000404909 ABCC9O60706 1549 aa7.05□□□□□ -1.28
RTN4-208ENST00000404909 ZCCHC6Q5VYS8 1495 aaKnown RBP7.05□□□□□ -1.28
RTN4-208ENST00000404909 SHROOM4Q9ULL8 1493 aa6.93□□□□□ -1.3
RTN4-208ENST00000404909 DCAF1Q9Y4B6 1507 aa6.91□□□□□ -1.3
RTN4-208ENST00000404909 NACADO15069 1562 aa6.85□□□□□ -1.31
RTN4-208ENST00000404909 MYO15BQ96JP2 1530 aa6.84□□□□□ -1.31
RTN4-208ENST00000404909 RB1CC1Q8TDY2 1594 aa6.81□□□□□ -1.32
RTN4-208ENST00000404909 SCRIBQ14160 1630 aa6.78□□□□□ -1.32
RTN4-208ENST00000404909 PABPN1Q86U42 306 aaKnown RBP eCLIP6.68□□□□□ -1.34
RTN4-208ENST00000404909 SUPT5HO00267 1087 aaKnown RBP6.65□□□□□ -1.34
RTN4-208ENST00000404909 UNC13AQ9UPW8 1703 aa6.64□□□□□ -1.35
RTN4-208ENST00000404909 BICRAQ9NZM4 1560 aa6.6□□□□□ -1.35
RTN4-208ENST00000404909 CECR2Q9BXF3 1484 aa6.57□□□□□ -1.36
RTN4-208ENST00000404909 RSF1Q96T23 1441 aaPredicted RBP6.53□□□□□ -1.36
RTN4-208ENST00000404909 MROH2BQ7Z745 1585 aa6.51□□□□□ -1.37
RTN4-208ENST00000404909 BAZ1AQ9NRL2 1556 aaPredicted RBP6.49□□□□□ -1.37
RTN4-208ENST00000404909 SMARCA4P51532 1647 aa6.47□□□□□ -1.37
RTN4-208ENST00000404909 WIZO95785 1651 aa6.45□□□□□ -1.38
RTN4-208ENST00000404909 EIF4G1Q04637 1599 aaKnown RBP6.42□□□□□ -1.38
RTN4-208ENST00000404909 ATAD2BQ9ULI0 1458 aa6.39□□□□□ -1.39
RTN4-208ENST00000404909 SMARCA2P51531 1590 aa6.37□□□□□ -1.39
RTN4-208ENST00000404909 BAZ1BQ9UIG0 1483 aaKnown RBP6.37□□□□□ -1.39
RTN4-208ENST00000404909 TOP2AP11388 1531 aaKnown RBP6.36□□□□□ -1.39
RTN4-208ENST00000404909 PEG3Q9GZU2 1588 aa6.36□□□□□ -1.39
RTN4-208ENST00000404909 CC2D2AQ9P2K1 1620 aa6.34□□□□□ -1.39
RTN4-208ENST00000404909 NCAPD3P42695 1498 aa6.33□□□□□ -1.4
RTN4-208ENST00000404909 CCDC88BA6NC98 1476 aa6.33□□□□□ -1.4
RTN4-208ENST00000404909 HMGXB3Q12766 1538 aa6.3□□□□□ -1.4
RTN4-208ENST00000404909 CHIC1Q5VXU3 224 aa6.29□□□□□ -1.4
RTN4-208ENST00000404909 DNAJC5BQ9UF47 199 aa6.28□□□□□ -1.4
RTN4-208ENST00000404909 TRIM41Q8WV44 630 aa6.23□□□□□ -1.41
RTN4-208ENST00000404909 CADPSQ9ULU8 1353 aa6.19□□□□□ -1.42
RTN4-208ENST00000404909 ABCC8Q09428 1581 aa6.19□□□□□ -1.42
RTN4-208ENST00000404909 CFTRP13569 1480 aa6.19□□□□□ -1.42
RTN4-208ENST00000404909 NESP48681 1621 aa6.17□□□□□ -1.42
RTN4-208ENST00000404909 FAM9AQ8IZU1 332 aaPredicted RBP6.16□□□□□ -1.42
RTN4-208ENST00000404909 WRNQ14191 1432 aaPredicted RBP eCLIP6.15□□□□□ -1.42
RTN4-208ENST00000404909 FANCD2Q9BXW9 1451 aa6.12□□□□□ -1.43
RTN4-208ENST00000404909 LAMC3Q9Y6N6 1575 aa6.11□□□□□ -1.43
RTN4-208ENST00000404909 SYNJ1O43426 1573 aa6.11□□□□□ -1.43
RTN4-208ENST00000404909 EHMT2Q96KQ7 1210 aa6.11□□□□□ -1.43
RTN4-208ENST00000404909 PDS5BQ9NTI5 1447 aa6.11□□□□□ -1.43
RTN4-208ENST00000404909 LOC105371045A0A1W2PR82 267 aa6.09□□□□□ -1.43
RTN4-208ENST00000404909 PRDM2Q13029 1718 aa6.09□□□□□ -1.43
RTN4-208ENST00000404909 CEP164Q9UPV0 1460 aa6.09□□□□□ -1.44
RTN4-208ENST00000404909 CUX1P39880 1505 aa6.09□□□□□ -1.44
RTN4-208ENST00000404909 SOGA1O94964 1423 aa6.08□□□□□ -1.44
RTN4-208ENST00000404909 TOP2BQ02880 1626 aa6.07□□□□□ -1.44
RTN4-208ENST00000404909 ERCC6Q03468 1493 aa6.06□□□□□ -1.44
RTN4-208ENST00000404909 KIF21AQ7Z4S6 1674 aa6.05□□□□□ -1.44
RTN4-208ENST00000404909 RUSC2Q8N2Y8 1516 aa6.05□□□□□ -1.44
RTN4-208ENST00000404909 BIVM-ERCC5R4GMW8 1640 aa6.05□□□□□ -1.44
RTN4-208ENST00000404909 URB2Q14146 1524 aaKnown RBP6.04□□□□□ -1.44
RTN4-208ENST00000404909 TOPBP1Q92547 1522 aa6.04□□□□□ -1.44
RTN4-208ENST00000404909 FGD5Q6ZNL6 1462 aa6.04□□□□□ -1.44
RTN4-208ENST00000404909 CSRNP3Q8WYN3 585 aa6.03□□□□□ -1.44
RTN4-208ENST00000404909 DNMBPQ6XZF7 1577 aa6.03□□□□□ -1.44
RTN4-208ENST00000404909 MRC2Q9UBG0 1479 aa6.02□□□□□ -1.45
RTN4-208ENST00000404909 RAD54L2Q9Y4B4 1467 aa6.02□□□□□ -1.45
RTN4-208ENST00000404909 POLA1P09884 1462 aaPredicted RBP6.01□□□□□ -1.45
RTN4-208ENST00000404909 EEA1Q15075 1411 aa6.01□□□□□ -1.45
RTN4-208ENST00000404909 CUX2O14529 1486 aa6.01□□□□□ -1.45
RTN4-208ENST00000404909 KIF27Q86VH2 1401 aa6□□□□□ -1.45
RTN4-208ENST00000404909 UBTFP17480 764 aaKnown RBP5.99□□□□□ -1.45
RTN4-208ENST00000404909 TDRD9Q8NDG6 1382 aaKnown RBP5.98□□□□□ -1.45
RTN4-208ENST00000404909 WDR62O43379 1518 aa5.96□□□□□ -1.45
RTN4-208ENST00000404909 ABCA10Q8WWZ4 1543 aa5.96□□□□□ -1.45
RTN4-208ENST00000404909 IGF1RP08069 1367 aa5.96□□□□□ -1.46
RTN4-208ENST00000404909 RANGAP1P46060 587 aaPredicted RBP5.95□□□□□ -1.46
RTN4-208ENST00000404909 THOC2Q8NI27 1593 aaKnown RBP5.95□□□□□ -1.46
RTN4-208ENST00000404909 GOLGA3Q08378 1498 aa5.95□□□□□ -1.46
RTN4-208ENST00000404909 RAPGEF2Q9Y4G8 1499 aa5.95□□□□□ -1.46
RTN4-208ENST00000404909 AQRO60306 1485 aaKnown RBP eCLIP5.94□□□□□ -1.467e-8■■■■■ 28.3
RTN4-208ENST00000404909 GAPVD1Q14C86 1478 aa5.94□□□□□ -1.46
RTN4-208ENST00000404909 CARMIL1Q5VZK9 1371 aa5.94□□□□□ -1.46
RTN4-208ENST00000404909 IFT140Q96RY7 1462 aa5.93□□□□□ -1.46
RTN4-208ENST00000404909 TARBP1Q13395 1621 aaKnown RBP5.93□□□□□ -1.46
RTN4-208ENST00000404909 PRXQ9BXM0 1461 aa5.93□□□□□ -1.46
RTN4-208ENST00000404909 ZNF608Q9ULD9 1512 aaPredicted RBP5.93□□□□□ -1.46
RTN4-208ENST00000404909 KIF21BO75037 1637 aa5.92□□□□□ -1.46
RTN4-208ENST00000404909 TNIKQ9UKE5 1360 aa5.92□□□□□ -1.46
RTN4-208ENST00000404909 WDR97A6NE52 1622 aa5.91□□□□□ -1.46
RTN4-208ENST00000404909 ABCA5Q8WWZ7 1642 aa5.9□□□□□ -1.46
RTN4-208ENST00000404909 CEP162Q5TB80 1403 aa5.9□□□□□ -1.47
RTN4-208ENST00000404909 ERICH3Q5RHP9 1530 aa5.89□□□□□ -1.47
RTN4-208ENST00000404909 GRIN2BQ13224 1484 aa5.89□□□□□ -1.47
RTN4-208ENST00000404909 FBLN2P98095 1184 aa5.89□□□□□ -1.47
RTN4-208ENST00000404909 EIF4G3O43432 1585 aaKnown RBP5.88□□□□□ -1.47
RTN4-208ENST00000404909 CLIP1P30622 1438 aa5.87□□□□□ -1.47
RTN4-208ENST00000404909 CHMP7Q8WUX9 453 aaPredicted RBP5.87□□□□□ -1.47
RTN4-208ENST00000404909 CUL7Q14999 1698 aa5.87□□□□□ -1.47
RTN4-208ENST00000404909 SNAPC4Q5SXM2 1469 aa5.86□□□□□ -1.47
RTN4-208ENST00000404909 FHAD1B1AJZ9 1412 aa5.86□□□□□ -1.47
RTN4-208ENST00000404909 PBRM1Q86U86 1689 aa5.86□□□□□ -1.47
RTN4-208ENST00000404909 P3H3Q8IVL6 736 aa5.84□□□□□ -1.47
RTN4-208ENST00000404909 PPARGC1BQ86YN6 1023 aaKnown RBP5.84□□□□□ -1.47
RTN4-208ENST00000404909 ADAMTS12P58397 1594 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms