Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCGF1Q9BSM1 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCGF1Q9BSM1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.3■■□□□ 1
PCGF1Q9BSM1 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.3■■□□□ 1
PCGF1Q9BSM1 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCGF1Q9BSM1 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCGF1Q9BSM1 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.3■■□□□ 1
PCGF1Q9BSM1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.3■■□□□ 1
PCGF1Q9BSM1 AC127502.1-201ENST00000399971 1502 ntBASIC21.29■■□□□ 1
PCGF1Q9BSM1 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCGF1Q9BSM1 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCGF1Q9BSM1 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCGF1Q9BSM1 AC016575.1-201ENST00000607026 382 ntBASIC21.29■■□□□ 1
PCGF1Q9BSM1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC21.29■■□□□ 1
PCGF1Q9BSM1 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCGF1Q9BSM1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCGF1Q9BSM1 AGPS-202ENST00000409888 815 ntTSL 4 BASIC21.28■■□□□ 1
PCGF1Q9BSM1 MIR3648-2-201ENST00000581792 180 ntBASIC21.28■■□□□ 1
PCGF1Q9BSM1 MIR3648-1-201ENST00000615959 180 ntBASIC21.28■■□□□ 1
PCGF1Q9BSM1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.28■■□□□ 1
PCGF1Q9BSM1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCGF1Q9BSM1 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCGF1Q9BSM1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.27■■□□□ 1
PCGF1Q9BSM1 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.27■■□□□ 1
PCGF1Q9BSM1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
PCGF1Q9BSM1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.27■■□□□ 1
PCGF1Q9BSM1 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
PCGF1Q9BSM1 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.27■□□□□ 0.99
PCGF1Q9BSM1 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PCGF1Q9BSM1 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCGF1Q9BSM1 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
PCGF1Q9BSM1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.26■□□□□ 0.99
PCGF1Q9BSM1 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.26■□□□□ 0.99
PCGF1Q9BSM1 LINC00273-201ENST00000539813 1452 ntBASIC21.26■□□□□ 0.99
PCGF1Q9BSM1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.26■□□□□ 0.99
PCGF1Q9BSM1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.26■□□□□ 0.99
PCGF1Q9BSM1 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCGF1Q9BSM1 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCGF1Q9BSM1 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCGF1Q9BSM1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCGF1Q9BSM1 CR559946.2-201ENST00000623684 991 ntBASIC21.25■□□□□ 0.99
PCGF1Q9BSM1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
PCGF1Q9BSM1 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCGF1Q9BSM1 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCGF1Q9BSM1 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
PCGF1Q9BSM1 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.23■□□□□ 0.99
PCGF1Q9BSM1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.23■□□□□ 0.99
PCGF1Q9BSM1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCGF1Q9BSM1 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCGF1Q9BSM1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCGF1Q9BSM1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 DUX4L13-201ENST00000554103 1267 ntBASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 DUX4L15-201ENST00000611059 1267 ntBASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 DUX4L23-201ENST00000615195 1269 ntBASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 DUX4L24-201ENST00000617576 1269 ntBASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 DUX4L22-201ENST00000618238 1269 ntBASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 DUX4L20-201ENST00000619712 1269 ntBASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 DUX4L21-201ENST00000622058 1269 ntBASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 DUX4L10-201ENST00000622460 1267 ntBASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 DUX4L25-201ENST00000624915 1269 ntBASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.22■□□□□ 0.99
PCGF1Q9BSM1 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCGF1Q9BSM1 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCGF1Q9BSM1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCGF1Q9BSM1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
PCGF1Q9BSM1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
PCGF1Q9BSM1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCGF1Q9BSM1 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCGF1Q9BSM1 MIR639-201ENST00000384974 98 ntBASIC21.2■□□□□ 0.98
PCGF1Q9BSM1 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCGF1Q9BSM1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCGF1Q9BSM1 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCGF1Q9BSM1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCGF1Q9BSM1 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCGF1Q9BSM1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.17■□□□□ 0.98
PCGF1Q9BSM1 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCGF1Q9BSM1 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
PCGF1Q9BSM1 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCGF1Q9BSM1 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.16■□□□□ 0.98
PCGF1Q9BSM1 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCGF1Q9BSM1 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCGF1Q9BSM1 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.16■□□□□ 0.98
PCGF1Q9BSM1 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
PCGF1Q9BSM1 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.16■□□□□ 0.98
PCGF1Q9BSM1 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCGF1Q9BSM1 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCGF1Q9BSM1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.15■□□□□ 0.98
PCGF1Q9BSM1 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCGF1Q9BSM1 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.15■□□□□ 0.98
PCGF1Q9BSM1 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PCGF1Q9BSM1 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms