Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CCDC144BQ3MJ40 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC144BQ3MJ40 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC144BQ3MJ40 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC144BQ3MJ40 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC144BQ3MJ40 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.78■■■□□ 2.36
CCDC144BQ3MJ40 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC144BQ3MJ40 BRD4-212ENST00000630599 726 ntTSL 2 BASIC29.78■■■□□ 2.36
CCDC144BQ3MJ40 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC144BQ3MJ40 ST7-AS1-201ENST00000456775 1889 ntBASIC29.78■■■□□ 2.36
CCDC144BQ3MJ40 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.77■■■□□ 2.36
CCDC144BQ3MJ40 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
CCDC144BQ3MJ40 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC29.75■■■□□ 2.35
CCDC144BQ3MJ40 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CCDC144BQ3MJ40 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.75■■■□□ 2.35
CCDC144BQ3MJ40 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.75■■■□□ 2.35
CCDC144BQ3MJ40 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CCDC144BQ3MJ40 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC29.75■■■□□ 2.35
CCDC144BQ3MJ40 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CCDC144BQ3MJ40 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC144BQ3MJ40 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CCDC144BQ3MJ40 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
CCDC144BQ3MJ40 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC29.72■■■□□ 2.35
CCDC144BQ3MJ40 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.71■■■□□ 2.35
CCDC144BQ3MJ40 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC144BQ3MJ40 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC144BQ3MJ40 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC144BQ3MJ40 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC144BQ3MJ40 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
CCDC144BQ3MJ40 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC144BQ3MJ40 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
CCDC144BQ3MJ40 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC29.7■■■□□ 2.35
CCDC144BQ3MJ40 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.35
CCDC144BQ3MJ40 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.69■■■□□ 2.34
CCDC144BQ3MJ40 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CCDC144BQ3MJ40 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CCDC144BQ3MJ40 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CCDC144BQ3MJ40 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC29.66■■■□□ 2.34
CCDC144BQ3MJ40 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.66■■■□□ 2.34
CCDC144BQ3MJ40 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
CCDC144BQ3MJ40 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CCDC144BQ3MJ40 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC29.65■■■□□ 2.34
CCDC144BQ3MJ40 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.34
CCDC144BQ3MJ40 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CCDC144BQ3MJ40 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.64■■■□□ 2.34
CCDC144BQ3MJ40 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CCDC144BQ3MJ40 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CCDC144BQ3MJ40 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CCDC144BQ3MJ40 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC29.63■■■□□ 2.33
CCDC144BQ3MJ40 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.63■■■□□ 2.33
CCDC144BQ3MJ40 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.63■■■□□ 2.33
CCDC144BQ3MJ40 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC29.63■■■□□ 2.33
CCDC144BQ3MJ40 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CCDC144BQ3MJ40 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC29.62■■■□□ 2.33
CCDC144BQ3MJ40 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CCDC144BQ3MJ40 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.61■■■□□ 2.33
CCDC144BQ3MJ40 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.61■■■□□ 2.33
CCDC144BQ3MJ40 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.61■■■□□ 2.33
CCDC144BQ3MJ40 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CCDC144BQ3MJ40 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CCDC144BQ3MJ40 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CCDC144BQ3MJ40 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.6■■■□□ 2.33
CCDC144BQ3MJ40 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.59■■■□□ 2.33
CCDC144BQ3MJ40 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.59■■■□□ 2.33
CCDC144BQ3MJ40 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.59■■■□□ 2.33
CCDC144BQ3MJ40 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
CCDC144BQ3MJ40 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
CCDC144BQ3MJ40 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
CCDC144BQ3MJ40 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.56■■■□□ 2.32
CCDC144BQ3MJ40 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
CCDC144BQ3MJ40 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
CCDC144BQ3MJ40 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.56■■■□□ 2.32
CCDC144BQ3MJ40 LINC00273-201ENST00000539813 1452 ntBASIC29.55■■■□□ 2.32
CCDC144BQ3MJ40 CHST11-202ENST00000546689 756 ntTSL 2 BASIC29.55■■■□□ 2.32
CCDC144BQ3MJ40 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.55■■■□□ 2.32
CCDC144BQ3MJ40 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
CCDC144BQ3MJ40 AC010864.1-201ENST00000609407 1511 ntBASIC29.55■■■□□ 2.32
CCDC144BQ3MJ40 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.55■■■□□ 2.32
CCDC144BQ3MJ40 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.55■■■□□ 2.32
CCDC144BQ3MJ40 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC29.55■■■□□ 2.32
CCDC144BQ3MJ40 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
CCDC144BQ3MJ40 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC29.54■■■□□ 2.32
CCDC144BQ3MJ40 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC29.54■■■□□ 2.32
CCDC144BQ3MJ40 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.54■■■□□ 2.32
CCDC144BQ3MJ40 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC144BQ3MJ40 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC29.52■■■□□ 2.32
CCDC144BQ3MJ40 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.52■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms