Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC129492.7-201ENST00000622992 756 ntBASIC16.44■□□□□ 0.22
HSPG2P98160 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HSPG2P98160 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HSPG2P98160 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HSPG2P98160 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HSPG2P98160 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HSPG2P98160 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HSPG2P98160 AC092296.2-201ENST00000589470 999 ntBASIC16.42■□□□□ 0.22
HSPG2P98160 THA1P-201ENST00000590384 1145 ntBASIC16.42■□□□□ 0.22
HSPG2P98160 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HSPG2P98160 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC16.42■□□□□ 0.22
HSPG2P98160 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HSPG2P98160 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
HSPG2P98160 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC16.41■□□□□ 0.22
HSPG2P98160 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HSPG2P98160 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC16.4■□□□□ 0.22
HSPG2P98160 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HSPG2P98160 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HSPG2P98160 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HSPG2P98160 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HSPG2P98160 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HSPG2P98160 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HSPG2P98160 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC16.39■□□□□ 0.21
HSPG2P98160 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC16.39■□□□□ 0.21
HSPG2P98160 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HSPG2P98160 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HSPG2P98160 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HSPG2P98160 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HSPG2P98160 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC16.39■□□□□ 0.21
HSPG2P98160 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HSPG2P98160 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HSPG2P98160 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HSPG2P98160 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC16.38■□□□□ 0.21
HSPG2P98160 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC16.38■□□□□ 0.21
HSPG2P98160 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HSPG2P98160 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
HSPG2P98160 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HSPG2P98160 AC009299.2-201ENST00000482477 511 ntBASIC16.37■□□□□ 0.21
HSPG2P98160 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
HSPG2P98160 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HSPG2P98160 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC16.37■□□□□ 0.21
HSPG2P98160 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC16.37■□□□□ 0.21
HSPG2P98160 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC16.37■□□□□ 0.21
HSPG2P98160 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HSPG2P98160 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HSPG2P98160 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HSPG2P98160 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HSPG2P98160 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HSPG2P98160 OR2A1-AS1-204ENST00000470435 602 ntBASIC16.35■□□□□ 0.21
HSPG2P98160 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HSPG2P98160 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
HSPG2P98160 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HSPG2P98160 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HSPG2P98160 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC16.34■□□□□ 0.21
HSPG2P98160 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HSPG2P98160 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HSPG2P98160 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HSPG2P98160 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HSPG2P98160 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HSPG2P98160 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HSPG2P98160 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC16.32■□□□□ 0.2
HSPG2P98160 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC16.32■□□□□ 0.2
HSPG2P98160 DUX4L18-201ENST00000553347 1267 ntBASIC16.32■□□□□ 0.2
HSPG2P98160 AC148477.6-201ENST00000623746 465 ntBASIC16.32■□□□□ 0.2
HSPG2P98160 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HSPG2P98160 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HSPG2P98160 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC16.31■□□□□ 0.2
HSPG2P98160 AL157400.5-201ENST00000507624 621 ntBASIC16.31■□□□□ 0.2
HSPG2P98160 AC131212.1-201ENST00000613771 668 ntBASIC16.31■□□□□ 0.2
HSPG2P98160 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HSPG2P98160 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC16.31■□□□□ 0.2
HSPG2P98160 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HSPG2P98160 AL592293.1-201ENST00000502889 1188 ntBASIC16.31■□□□□ 0.2
HSPG2P98160 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HSPG2P98160 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HSPG2P98160 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC16.31■□□□□ 0.2
HSPG2P98160 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
HSPG2P98160 RP9P-202ENST00000450133 1212 ntBASIC16.3■□□□□ 0.2
HSPG2P98160 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HSPG2P98160 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HSPG2P98160 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HSPG2P98160 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HSPG2P98160 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HSPG2P98160 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HSPG2P98160 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HSPG2P98160 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HSPG2P98160 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
HSPG2P98160 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HSPG2P98160 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HSPG2P98160 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC16.28■□□□□ 0.2
HSPG2P98160 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HSPG2P98160 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HSPG2P98160 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HSPG2P98160 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HSPG2P98160 GUSBP5-201ENST00000418136 578 ntBASIC16.27■□□□□ 0.2
HSPG2P98160 CHST11-203ENST00000547956 936 ntTSL 2 BASIC16.27■□□□□ 0.19
HSPG2P98160 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
HSPG2P98160 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC16.26■□□□□ 0.19
HSPG2P98160 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HSPG2P98160 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms