Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SLC28A1O00337 BX255925.1-201ENST00000566954 1854 ntBASIC24.68■■□□□ 1.54
SLC28A1O00337 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
SLC28A1O00337 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.67■■□□□ 1.54
SLC28A1O00337 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
SLC28A1O00337 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
SLC28A1O00337 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC24.66■■□□□ 1.54
SLC28A1O00337 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
SLC28A1O00337 AC005559.1-201ENST00000589661 871 ntBASIC24.66■■□□□ 1.54
SLC28A1O00337 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.66■■□□□ 1.54
SLC28A1O00337 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.65■■□□□ 1.54
SLC28A1O00337 SUZ12P1-203ENST00000578195 985 ntBASIC24.65■■□□□ 1.54
SLC28A1O00337 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SLC28A1O00337 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
SLC28A1O00337 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.64■■□□□ 1.54
SLC28A1O00337 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
SLC28A1O00337 HNRNPLP2-201ENST00000568980 1570 ntBASIC24.64■■□□□ 1.54
SLC28A1O00337 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
SLC28A1O00337 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
SLC28A1O00337 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
SLC28A1O00337 AC100797.4-201ENST00000631653 1827 ntBASIC24.63■■□□□ 1.53
SLC28A1O00337 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.63■■□□□ 1.53
SLC28A1O00337 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC24.63■■□□□ 1.53
SLC28A1O00337 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
SLC28A1O00337 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
SLC28A1O00337 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
SLC28A1O00337 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.62■■□□□ 1.53
SLC28A1O00337 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SLC28A1O00337 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SLC28A1O00337 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SLC28A1O00337 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SLC28A1O00337 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SLC28A1O00337 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC24.61■■□□□ 1.53
SLC28A1O00337 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SLC28A1O00337 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SLC28A1O00337 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SLC28A1O00337 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.6■■□□□ 1.53
SLC28A1O00337 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SLC28A1O00337 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
SLC28A1O00337 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
SLC28A1O00337 AL121749.1-202ENST00000609313 2153 ntBASIC24.6■■□□□ 1.53
SLC28A1O00337 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.6■■□□□ 1.53
SLC28A1O00337 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
SLC28A1O00337 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SLC28A1O00337 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SLC28A1O00337 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SLC28A1O00337 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
SLC28A1O00337 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.58■■□□□ 1.53
SLC28A1O00337 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.58■■□□□ 1.53
SLC28A1O00337 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
SLC28A1O00337 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SLC28A1O00337 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
SLC28A1O00337 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.57■■□□□ 1.52
SLC28A1O00337 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SLC28A1O00337 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
SLC28A1O00337 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.56■■□□□ 1.52
SLC28A1O00337 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.56■■□□□ 1.52
SLC28A1O00337 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SLC28A1O00337 AC108673.1-201ENST00000510422 1159 ntBASIC24.56■■□□□ 1.52
SLC28A1O00337 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SLC28A1O00337 LINC01003-201ENST00000564834 1764 ntBASIC24.55■■□□□ 1.52
SLC28A1O00337 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
SLC28A1O00337 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SLC28A1O00337 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.54■■□□□ 1.52
SLC28A1O00337 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SLC28A1O00337 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SLC28A1O00337 AP002414.2-202ENST00000590929 1450 ntBASIC24.53■■□□□ 1.52
SLC28A1O00337 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
SLC28A1O00337 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.53■■□□□ 1.52
SLC28A1O00337 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
SLC28A1O00337 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SLC28A1O00337 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SLC28A1O00337 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.52■■□□□ 1.52
SLC28A1O00337 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.52■■□□□ 1.52
SLC28A1O00337 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
SLC28A1O00337 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SLC28A1O00337 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SLC28A1O00337 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SLC28A1O00337 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
SLC28A1O00337 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.5■■□□□ 1.51
SLC28A1O00337 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SLC28A1O00337 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SLC28A1O00337 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
SLC28A1O00337 AC135983.2-203ENST00000454486 1613 ntBASIC24.5■■□□□ 1.51
SLC28A1O00337 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.49■■□□□ 1.51
SLC28A1O00337 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.49■■□□□ 1.51
SLC28A1O00337 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.49■■□□□ 1.51
SLC28A1O00337 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
SLC28A1O00337 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
SLC28A1O00337 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.48■■□□□ 1.51
SLC28A1O00337 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.48■■□□□ 1.51
SLC28A1O00337 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SLC28A1O00337 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SLC28A1O00337 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC24.47■■□□□ 1.51
SLC28A1O00337 DUX4L28-201ENST00000623687 678 ntBASIC24.47■■□□□ 1.51
SLC28A1O00337 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.47■■□□□ 1.51
SLC28A1O00337 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SLC28A1O00337 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
SLC28A1O00337 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SLC28A1O00337 MIR6090-201ENST00000622481 60 ntBASIC24.46■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms