Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV3A0A0B4J244 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV3A0A0B4J244 AC100797.4-201ENST00000631653 1827 ntBASIC20.62■□□□□ 0.89
TRAV3A0A0B4J244 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TRAV3A0A0B4J244 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
TRAV3A0A0B4J244 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV3A0A0B4J244 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV3A0A0B4J244 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV3A0A0B4J244 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
TRAV3A0A0B4J244 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV3A0A0B4J244 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV3A0A0B4J244 CHML-205ENST00000638160 705 ntTSL 3 BASIC20.6■□□□□ 0.89
TRAV3A0A0B4J244 BX255925.1-201ENST00000566954 1854 ntBASIC20.6■□□□□ 0.89
TRAV3A0A0B4J244 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV3A0A0B4J244 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV3A0A0B4J244 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRAV3A0A0B4J244 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRAV3A0A0B4J244 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.59■□□□□ 0.89
TRAV3A0A0B4J244 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.59■□□□□ 0.89
TRAV3A0A0B4J244 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV3A0A0B4J244 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV3A0A0B4J244 SUZ12P1-203ENST00000578195 985 ntBASIC20.58■□□□□ 0.89
TRAV3A0A0B4J244 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.58■□□□□ 0.88
TRAV3A0A0B4J244 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
TRAV3A0A0B4J244 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRAV3A0A0B4J244 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRAV3A0A0B4J244 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRAV3A0A0B4J244 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV3A0A0B4J244 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV3A0A0B4J244 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC20.57■□□□□ 0.88
TRAV3A0A0B4J244 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV3A0A0B4J244 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV3A0A0B4J244 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV3A0A0B4J244 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV3A0A0B4J244 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV3A0A0B4J244 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.56■□□□□ 0.88
TRAV3A0A0B4J244 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV3A0A0B4J244 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV3A0A0B4J244 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV3A0A0B4J244 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TRAV3A0A0B4J244 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAV3A0A0B4J244 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV3A0A0B4J244 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV3A0A0B4J244 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TRAV3A0A0B4J244 AC005559.1-201ENST00000589661 871 ntBASIC20.53■□□□□ 0.88
TRAV3A0A0B4J244 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TRAV3A0A0B4J244 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.53■□□□□ 0.88
TRAV3A0A0B4J244 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.53■□□□□ 0.88
TRAV3A0A0B4J244 LINC01003-201ENST00000564834 1764 ntBASIC20.52■□□□□ 0.88
TRAV3A0A0B4J244 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV3A0A0B4J244 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.52■□□□□ 0.88
TRAV3A0A0B4J244 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV3A0A0B4J244 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TRAV3A0A0B4J244 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV3A0A0B4J244 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV3A0A0B4J244 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
TRAV3A0A0B4J244 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV3A0A0B4J244 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV3A0A0B4J244 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV3A0A0B4J244 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
TRAV3A0A0B4J244 HNRNPLP2-201ENST00000568980 1570 ntBASIC20.5■□□□□ 0.87
TRAV3A0A0B4J244 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV3A0A0B4J244 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV3A0A0B4J244 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV3A0A0B4J244 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV3A0A0B4J244 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV3A0A0B4J244 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV3A0A0B4J244 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.48■□□□□ 0.87
TRAV3A0A0B4J244 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.48■□□□□ 0.87
TRAV3A0A0B4J244 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
TRAV3A0A0B4J244 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.47■□□□□ 0.87
TRAV3A0A0B4J244 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV3A0A0B4J244 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.47■□□□□ 0.87
TRAV3A0A0B4J244 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
TRAV3A0A0B4J244 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TRAV3A0A0B4J244 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAV3A0A0B4J244 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV3A0A0B4J244 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.87
TRAV3A0A0B4J244 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV3A0A0B4J244 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.45■□□□□ 0.86
TRAV3A0A0B4J244 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV3A0A0B4J244 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.45■□□□□ 0.86
TRAV3A0A0B4J244 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV3A0A0B4J244 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
TRAV3A0A0B4J244 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV3A0A0B4J244 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.45■□□□□ 0.86
TRAV3A0A0B4J244 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.44■□□□□ 0.86
TRAV3A0A0B4J244 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV3A0A0B4J244 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.44■□□□□ 0.86
TRAV3A0A0B4J244 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms