Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
SMC1BQ8NDV3 AC004987.1-201ENST00000428627 508 ntBASIC31.71■■■□□ 2.67
SMC1BQ8NDV3 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.71■■■□□ 2.67
SMC1BQ8NDV3 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
SMC1BQ8NDV3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SMC1BQ8NDV3 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
SMC1BQ8NDV3 ATP5G2P3-201ENST00000429083 425 ntBASIC31.69■■■□□ 2.66
SMC1BQ8NDV3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.69■■■□□ 2.66
SMC1BQ8NDV3 GUK1-208ENST00000366728 842 ntTSL 2 BASIC31.68■■■□□ 2.66
SMC1BQ8NDV3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC31.68■■■□□ 2.66
SMC1BQ8NDV3 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SMC1BQ8NDV3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
SMC1BQ8NDV3 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
SMC1BQ8NDV3 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.65■■■□□ 2.66
SMC1BQ8NDV3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
SMC1BQ8NDV3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
SMC1BQ8NDV3 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.65
SMC1BQ8NDV3 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC31.63■■■□□ 2.65
SMC1BQ8NDV3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC31.63■■■□□ 2.65
SMC1BQ8NDV3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SMC1BQ8NDV3 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
SMC1BQ8NDV3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
SMC1BQ8NDV3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.6■■■□□ 2.65
SMC1BQ8NDV3 KRT18P60-201ENST00000312876 1297 ntBASIC31.6■■■□□ 2.65
SMC1BQ8NDV3 AL035685.1-201ENST00000636663 812 ntBASIC31.6■■■□□ 2.65
SMC1BQ8NDV3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.6■■■□□ 2.65
SMC1BQ8NDV3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC31.58■■■□□ 2.65
SMC1BQ8NDV3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SMC1BQ8NDV3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.58■■■□□ 2.65
SMC1BQ8NDV3 HES4-204ENST00000484667 667 ntTSL 3 BASIC31.58■■■□□ 2.65
SMC1BQ8NDV3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC31.58■■■□□ 2.65
SMC1BQ8NDV3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC31.58■■■□□ 2.65
SMC1BQ8NDV3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SMC1BQ8NDV3 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
SMC1BQ8NDV3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC31.57■■■□□ 2.64
SMC1BQ8NDV3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SMC1BQ8NDV3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SMC1BQ8NDV3 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SMC1BQ8NDV3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC31.52■■■□□ 2.64
SMC1BQ8NDV3 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SMC1BQ8NDV3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
SMC1BQ8NDV3 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.51■■■□□ 2.63
SMC1BQ8NDV3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.51■■■□□ 2.63
SMC1BQ8NDV3 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SMC1BQ8NDV3 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SMC1BQ8NDV3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.47■■■□□ 2.63
SMC1BQ8NDV3 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SMC1BQ8NDV3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.46■■■□□ 2.63
SMC1BQ8NDV3 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SMC1BQ8NDV3 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.63
SMC1BQ8NDV3 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SMC1BQ8NDV3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SMC1BQ8NDV3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.44■■■□□ 2.62
SMC1BQ8NDV3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SMC1BQ8NDV3 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SMC1BQ8NDV3 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SMC1BQ8NDV3 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.41■■■□□ 2.62
SMC1BQ8NDV3 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SMC1BQ8NDV3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SMC1BQ8NDV3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SMC1BQ8NDV3 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.41■■■□□ 2.62
SMC1BQ8NDV3 AL451085.2-201ENST00000605085 799 ntBASIC31.41■■■□□ 2.62
SMC1BQ8NDV3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
SMC1BQ8NDV3 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.41■■■□□ 2.62
SMC1BQ8NDV3 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SMC1BQ8NDV3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SMC1BQ8NDV3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.4■■■□□ 2.62
SMC1BQ8NDV3 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SMC1BQ8NDV3 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SMC1BQ8NDV3 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SMC1BQ8NDV3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.39■■■□□ 2.62
SMC1BQ8NDV3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SMC1BQ8NDV3 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SMC1BQ8NDV3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
SMC1BQ8NDV3 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
SMC1BQ8NDV3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.38■■■□□ 2.61
SMC1BQ8NDV3 AC060814.1-201ENST00000554326 538 ntBASIC31.38■■■□□ 2.61
SMC1BQ8NDV3 LINC00273-201ENST00000539813 1452 ntBASIC31.38■■■□□ 2.61
SMC1BQ8NDV3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.38■■■□□ 2.61
SMC1BQ8NDV3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.37■■■□□ 2.61
SMC1BQ8NDV3 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC31.36■■■□□ 2.61
SMC1BQ8NDV3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC31.36■■■□□ 2.61
SMC1BQ8NDV3 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SMC1BQ8NDV3 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC31.36■■■□□ 2.61
SMC1BQ8NDV3 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.36■■■□□ 2.61
SMC1BQ8NDV3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SMC1BQ8NDV3 MIR935-201ENST00000401179 91 ntBASIC31.33■■■□□ 2.61
SMC1BQ8NDV3 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.32■■■□□ 2.6
SMC1BQ8NDV3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.32■■■□□ 2.6
SMC1BQ8NDV3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SMC1BQ8NDV3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SMC1BQ8NDV3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
SMC1BQ8NDV3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.29■■■□□ 2.6
SMC1BQ8NDV3 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SMC1BQ8NDV3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SMC1BQ8NDV3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC31.28■■■□□ 2.6
SMC1BQ8NDV3 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.28■■■□□ 2.6
SMC1BQ8NDV3 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
SMC1BQ8NDV3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SMC1BQ8NDV3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC31.27■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms