Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13DQ5THJ4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS13DQ5THJ4 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13DQ5THJ4 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13DQ5THJ4 GPX1-201ENST00000419349 1106 ntBASIC17.91■□□□□ 0.46
VPS13DQ5THJ4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS13DQ5THJ4 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC17.9■□□□□ 0.46
VPS13DQ5THJ4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS13DQ5THJ4 AC120057.4-201ENST00000624722 1615 ntBASIC17.9■□□□□ 0.46
VPS13DQ5THJ4 AL161658.1-201ENST00000623641 1967 ntBASIC17.9■□□□□ 0.46
VPS13DQ5THJ4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
VPS13DQ5THJ4 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
VPS13DQ5THJ4 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS13DQ5THJ4 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
VPS13DQ5THJ4 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13DQ5THJ4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13DQ5THJ4 EI24-212ENST00000615917 1407 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS13DQ5THJ4 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13DQ5THJ4 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13DQ5THJ4 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS13DQ5THJ4 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13DQ5THJ4 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13DQ5THJ4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS13DQ5THJ4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13DQ5THJ4 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13DQ5THJ4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS13DQ5THJ4 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13DQ5THJ4 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
VPS13DQ5THJ4 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13DQ5THJ4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13DQ5THJ4 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VPS13DQ5THJ4 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13DQ5THJ4 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13DQ5THJ4 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13DQ5THJ4 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13DQ5THJ4 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13DQ5THJ4 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
VPS13DQ5THJ4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13DQ5THJ4 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC17.83■□□□□ 0.44
VPS13DQ5THJ4 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13DQ5THJ4 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
VPS13DQ5THJ4 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13DQ5THJ4 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13DQ5THJ4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13DQ5THJ4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13DQ5THJ4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13DQ5THJ4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13DQ5THJ4 CEP120-209ENST00000515110 606 ntTSL 3 BASIC17.81■□□□□ 0.44
VPS13DQ5THJ4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS13DQ5THJ4 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13DQ5THJ4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC17.8■□□□□ 0.44
VPS13DQ5THJ4 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS13DQ5THJ4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
VPS13DQ5THJ4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13DQ5THJ4 TPT1-202ENST00000379055 948 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13DQ5THJ4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VPS13DQ5THJ4 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13DQ5THJ4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13DQ5THJ4 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
VPS13DQ5THJ4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
VPS13DQ5THJ4 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
VPS13DQ5THJ4 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VPS13DQ5THJ4 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS13DQ5THJ4 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS13DQ5THJ4 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13DQ5THJ4 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VPS13DQ5THJ4 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
VPS13DQ5THJ4 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS13DQ5THJ4 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
VPS13DQ5THJ4 NTF6A-201ENST00000591175 560 ntBASIC17.75■□□□□ 0.43
VPS13DQ5THJ4 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13DQ5THJ4 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13DQ5THJ4 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13DQ5THJ4 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13DQ5THJ4 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13DQ5THJ4 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13DQ5THJ4 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13DQ5THJ4 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13DQ5THJ4 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13DQ5THJ4 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS13DQ5THJ4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13DQ5THJ4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13DQ5THJ4 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13DQ5THJ4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
VPS13DQ5THJ4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS13DQ5THJ4 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13DQ5THJ4 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13DQ5THJ4 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VPS13DQ5THJ4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS13DQ5THJ4 AC060814.1-201ENST00000554326 538 ntBASIC17.7■□□□□ 0.42
VPS13DQ5THJ4 WHAMMP2-203ENST00000563942 1603 ntBASIC17.7■□□□□ 0.42
VPS13DQ5THJ4 AC010864.1-201ENST00000609407 1511 ntBASIC17.7■□□□□ 0.42
VPS13DQ5THJ4 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13DQ5THJ4 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS13DQ5THJ4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13DQ5THJ4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13DQ5THJ4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13DQ5THJ4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VPS13DQ5THJ4 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS13DQ5THJ4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms