Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
CCDC40Q4G0X9 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
CCDC40Q4G0X9 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.45■■■□□ 2.14
CCDC40Q4G0X9 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
CCDC40Q4G0X9 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC40Q4G0X9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC40Q4G0X9 AC005559.1-201ENST00000589661 871 ntBASIC28.42■■■□□ 2.14
CCDC40Q4G0X9 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC40Q4G0X9 AC127502.1-201ENST00000399971 1502 ntBASIC28.4■■■□□ 2.14
CCDC40Q4G0X9 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CCDC40Q4G0X9 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
CCDC40Q4G0X9 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CCDC40Q4G0X9 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
CCDC40Q4G0X9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CCDC40Q4G0X9 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CCDC40Q4G0X9 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CCDC40Q4G0X9 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC28.37■■■□□ 2.13
CCDC40Q4G0X9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CCDC40Q4G0X9 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC28.35■■■□□ 2.13
CCDC40Q4G0X9 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
CCDC40Q4G0X9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CCDC40Q4G0X9 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
CCDC40Q4G0X9 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CCDC40Q4G0X9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC28.34■■■□□ 2.13
CCDC40Q4G0X9 AC142086.6-201ENST00000621154 1765 ntBASIC28.34■■■□□ 2.13
CCDC40Q4G0X9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.34■■■□□ 2.13
CCDC40Q4G0X9 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CCDC40Q4G0X9 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC28.33■■■□□ 2.13
CCDC40Q4G0X9 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC28.33■■■□□ 2.13
CCDC40Q4G0X9 DRD5P2-201ENST00000421395 2012 ntBASIC28.32■■■□□ 2.12
CCDC40Q4G0X9 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CCDC40Q4G0X9 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
CCDC40Q4G0X9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.31■■■□□ 2.12
CCDC40Q4G0X9 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
CCDC40Q4G0X9 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CCDC40Q4G0X9 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC28.31■■■□□ 2.12
CCDC40Q4G0X9 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.31■■■□□ 2.12
CCDC40Q4G0X9 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CCDC40Q4G0X9 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
CCDC40Q4G0X9 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CCDC40Q4G0X9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CCDC40Q4G0X9 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
CCDC40Q4G0X9 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CCDC40Q4G0X9 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC28.29■■■□□ 2.12
CCDC40Q4G0X9 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
CCDC40Q4G0X9 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
CCDC40Q4G0X9 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
CCDC40Q4G0X9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC28.28■■■□□ 2.12
CCDC40Q4G0X9 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.28■■■□□ 2.12
CCDC40Q4G0X9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.12
CCDC40Q4G0X9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CCDC40Q4G0X9 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
CCDC40Q4G0X9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC28.28■■■□□ 2.12
CCDC40Q4G0X9 AP004833.2-201ENST00000532228 1454 ntBASIC28.27■■■□□ 2.12
CCDC40Q4G0X9 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC40Q4G0X9 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC28.27■■■□□ 2.12
CCDC40Q4G0X9 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC40Q4G0X9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC40Q4G0X9 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC40Q4G0X9 DUX4L28-201ENST00000623687 678 ntBASIC28.26■■■□□ 2.11
CCDC40Q4G0X9 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC28.25■■■□□ 2.11
CCDC40Q4G0X9 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
CCDC40Q4G0X9 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.24■■■□□ 2.11
CCDC40Q4G0X9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.23■■■□□ 2.11
CCDC40Q4G0X9 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC28.23■■■□□ 2.11
CCDC40Q4G0X9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.23■■■□□ 2.11
CCDC40Q4G0X9 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC40Q4G0X9 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC40Q4G0X9 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC28.22■■■□□ 2.11
CCDC40Q4G0X9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.22■■■□□ 2.11
CCDC40Q4G0X9 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.22■■■□□ 2.11
CCDC40Q4G0X9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC28.22■■■□□ 2.11
CCDC40Q4G0X9 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC40Q4G0X9 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC40Q4G0X9 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CCDC40Q4G0X9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CCDC40Q4G0X9 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC28.21■■■□□ 2.11
CCDC40Q4G0X9 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CCDC40Q4G0X9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
CCDC40Q4G0X9 MIR3665-201ENST00000578708 105 ntBASIC28.2■■■□□ 2.1
CCDC40Q4G0X9 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC28.2■■■□□ 2.1
CCDC40Q4G0X9 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
CCDC40Q4G0X9 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
CCDC40Q4G0X9 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC40Q4G0X9 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC40Q4G0X9 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
CCDC40Q4G0X9 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC40Q4G0X9 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC40Q4G0X9 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC40Q4G0X9 AC108673.1-201ENST00000510422 1159 ntBASIC28.18■■■□□ 2.1
CCDC40Q4G0X9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC40Q4G0X9 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.18■■■□□ 2.1
CCDC40Q4G0X9 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC40Q4G0X9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
CCDC40Q4G0X9 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.17■■■□□ 2.1
CCDC40Q4G0X9 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
CCDC40Q4G0X9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CCDC40Q4G0X9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.16■■■□□ 2.1
CCDC40Q4G0X9 AP006261.1-201ENST00000584783 668 ntBASIC28.16■■■□□ 2.1
CCDC40Q4G0X9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms