Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.66■■□□□ 1.86
NEK3P51956 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
NEK3P51956 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
NEK3P51956 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
NEK3P51956 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.65■■□□□ 1.86
NEK3P51956 MIR6090-201ENST00000622481 60 ntBASIC26.65■■□□□ 1.86
NEK3P51956 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NEK3P51956 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NEK3P51956 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.85
NEK3P51956 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
NEK3P51956 DUX4L29-201ENST00000425409 679 ntBASIC26.63■■□□□ 1.85
NEK3P51956 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.63■■□□□ 1.85
NEK3P51956 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.62■■□□□ 1.85
NEK3P51956 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.62■■□□□ 1.85
NEK3P51956 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
NEK3P51956 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.61■■□□□ 1.85
NEK3P51956 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
NEK3P51956 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
NEK3P51956 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
NEK3P51956 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.6■■□□□ 1.85
NEK3P51956 MIR7108-201ENST00000614319 87 ntBASIC26.6■■□□□ 1.85
NEK3P51956 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
NEK3P51956 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
NEK3P51956 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
NEK3P51956 AL135925.1-201ENST00000605920 1701 ntBASIC26.59■■□□□ 1.85
NEK3P51956 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NEK3P51956 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
NEK3P51956 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NEK3P51956 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.59■■□□□ 1.85
NEK3P51956 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
NEK3P51956 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
NEK3P51956 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.58■■□□□ 1.85
NEK3P51956 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
NEK3P51956 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NEK3P51956 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.57■■□□□ 1.84
NEK3P51956 ZNRF2P2-203ENST00000454624 420 ntBASIC26.57■■□□□ 1.84
NEK3P51956 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NEK3P51956 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NEK3P51956 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NEK3P51956 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NEK3P51956 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NEK3P51956 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NEK3P51956 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.56■■□□□ 1.84
NEK3P51956 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NEK3P51956 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
NEK3P51956 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.55■■□□□ 1.84
NEK3P51956 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NEK3P51956 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
NEK3P51956 AC021231.2-201ENST00000594613 730 ntBASIC26.55■■□□□ 1.84
NEK3P51956 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
NEK3P51956 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NEK3P51956 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NEK3P51956 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NEK3P51956 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NEK3P51956 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NEK3P51956 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NEK3P51956 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.51■■□□□ 1.83
NEK3P51956 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NEK3P51956 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NEK3P51956 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NEK3P51956 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.49■■□□□ 1.83
NEK3P51956 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NEK3P51956 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NEK3P51956 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.49■■□□□ 1.83
NEK3P51956 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.49■■□□□ 1.83
NEK3P51956 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
NEK3P51956 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
NEK3P51956 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
NEK3P51956 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
NEK3P51956 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.47■■□□□ 1.83
NEK3P51956 AC142086.6-201ENST00000621154 1765 ntBASIC26.46■■□□□ 1.83
NEK3P51956 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.46■■□□□ 1.83
NEK3P51956 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.46■■□□□ 1.83
NEK3P51956 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.46■■□□□ 1.83
NEK3P51956 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NEK3P51956 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.46■■□□□ 1.83
NEK3P51956 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.45■■□□□ 1.82
NEK3P51956 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
NEK3P51956 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
NEK3P51956 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
NEK3P51956 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
NEK3P51956 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
NEK3P51956 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
NEK3P51956 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
NEK3P51956 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
NEK3P51956 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
NEK3P51956 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
NEK3P51956 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
NEK3P51956 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.82
NEK3P51956 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
NEK3P51956 AC010864.1-201ENST00000609407 1511 ntBASIC26.4■■□□□ 1.82
NEK3P51956 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
NEK3P51956 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.4■■□□□ 1.82
NEK3P51956 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.4■■□□□ 1.82
NEK3P51956 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.4■■□□□ 1.82
NEK3P51956 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
NEK3P51956 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC26.39■■□□□ 1.82
NEK3P51956 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
NEK3P51956 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
NEK3P51956 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.39■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms