Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS25Q9BRG1 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 CALM3-209ENST00000597743 577 ntTSL 4 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS25Q9BRG1 Z98882.1-201ENST00000622160 2253 ntBASIC14.15□□□□□ -0.14
VPS25Q9BRG1 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 MIR6090-201ENST00000622481 60 ntBASIC14.14□□□□□ -0.15
VPS25Q9BRG1 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS25Q9BRG1 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS25Q9BRG1 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms