Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC27.52■■■□□ 2
PCDHA3Q9Y5H8 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC27.51■■□□□ 1.99
PCDHA3Q9Y5H8 AC010864.1-201ENST00000609407 1511 ntBASIC27.51■■□□□ 1.99
PCDHA3Q9Y5H8 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
PCDHA3Q9Y5H8 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
PCDHA3Q9Y5H8 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
PCDHA3Q9Y5H8 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
PCDHA3Q9Y5H8 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
PCDHA3Q9Y5H8 SETD8P1-201ENST00000623146 1180 ntBASIC27.48■■□□□ 1.99
PCDHA3Q9Y5H8 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
PCDHA3Q9Y5H8 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
PCDHA3Q9Y5H8 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
PCDHA3Q9Y5H8 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
PCDHA3Q9Y5H8 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC27.46■■□□□ 1.99
PCDHA3Q9Y5H8 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
PCDHA3Q9Y5H8 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC27.46■■□□□ 1.99
PCDHA3Q9Y5H8 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.46■■□□□ 1.99
PCDHA3Q9Y5H8 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
PCDHA3Q9Y5H8 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
PCDHA3Q9Y5H8 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
PCDHA3Q9Y5H8 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
PCDHA3Q9Y5H8 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
PCDHA3Q9Y5H8 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
PCDHA3Q9Y5H8 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
PCDHA3Q9Y5H8 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
PCDHA3Q9Y5H8 AC142086.6-201ENST00000621154 1765 ntBASIC27.43■■□□□ 1.98
PCDHA3Q9Y5H8 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC27.42■■□□□ 1.98
PCDHA3Q9Y5H8 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC27.42■■□□□ 1.98
PCDHA3Q9Y5H8 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PCDHA3Q9Y5H8 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PCDHA3Q9Y5H8 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC27.42■■□□□ 1.98
PCDHA3Q9Y5H8 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PCDHA3Q9Y5H8 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
PCDHA3Q9Y5H8 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.41■■□□□ 1.98
PCDHA3Q9Y5H8 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
PCDHA3Q9Y5H8 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
PCDHA3Q9Y5H8 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
PCDHA3Q9Y5H8 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
PCDHA3Q9Y5H8 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
PCDHA3Q9Y5H8 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC27.38■■□□□ 1.97
PCDHA3Q9Y5H8 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.38■■□□□ 1.97
PCDHA3Q9Y5H8 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC27.38■■□□□ 1.97
PCDHA3Q9Y5H8 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
PCDHA3Q9Y5H8 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
PCDHA3Q9Y5H8 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
PCDHA3Q9Y5H8 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
PCDHA3Q9Y5H8 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC27.34■■□□□ 1.97
PCDHA3Q9Y5H8 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC27.34■■□□□ 1.97
PCDHA3Q9Y5H8 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
PCDHA3Q9Y5H8 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.33■■□□□ 1.96
PCDHA3Q9Y5H8 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC27.32■■□□□ 1.96
PCDHA3Q9Y5H8 DRD5P2-201ENST00000421395 2012 ntBASIC27.32■■□□□ 1.96
PCDHA3Q9Y5H8 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
PCDHA3Q9Y5H8 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCDHA3Q9Y5H8 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCDHA3Q9Y5H8 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC27.3■■□□□ 1.96
PCDHA3Q9Y5H8 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
PCDHA3Q9Y5H8 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
PCDHA3Q9Y5H8 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC27.29■■□□□ 1.96
PCDHA3Q9Y5H8 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.29■■□□□ 1.96
PCDHA3Q9Y5H8 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC27.29■■□□□ 1.96
PCDHA3Q9Y5H8 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCDHA3Q9Y5H8 AL391121.1-201ENST00000607967 1349 ntBASIC27.28■■□□□ 1.96
PCDHA3Q9Y5H8 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PCDHA3Q9Y5H8 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
PCDHA3Q9Y5H8 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.96
PCDHA3Q9Y5H8 CAHM-201ENST00000604200 896 ntBASIC27.26■■□□□ 1.95
PCDHA3Q9Y5H8 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
PCDHA3Q9Y5H8 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
PCDHA3Q9Y5H8 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
PCDHA3Q9Y5H8 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
PCDHA3Q9Y5H8 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.25■■□□□ 1.95
PCDHA3Q9Y5H8 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC27.25■■□□□ 1.95
PCDHA3Q9Y5H8 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
PCDHA3Q9Y5H8 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
PCDHA3Q9Y5H8 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
PCDHA3Q9Y5H8 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
PCDHA3Q9Y5H8 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
PCDHA3Q9Y5H8 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC27.22■■□□□ 1.95
PCDHA3Q9Y5H8 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PCDHA3Q9Y5H8 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PCDHA3Q9Y5H8 AC136428.2-201ENST00000563187 214 ntBASIC27.21■■□□□ 1.95
PCDHA3Q9Y5H8 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PCDHA3Q9Y5H8 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PCDHA3Q9Y5H8 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
PCDHA3Q9Y5H8 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
PCDHA3Q9Y5H8 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC27.19■■□□□ 1.94
PCDHA3Q9Y5H8 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
PCDHA3Q9Y5H8 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
PCDHA3Q9Y5H8 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC27.18■■□□□ 1.94
PCDHA3Q9Y5H8 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
PCDHA3Q9Y5H8 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC27.18■■□□□ 1.94
PCDHA3Q9Y5H8 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
PCDHA3Q9Y5H8 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC27.17■■□□□ 1.94
PCDHA3Q9Y5H8 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PCDHA3Q9Y5H8 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
PCDHA3Q9Y5H8 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PCDHA3Q9Y5H8 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC27.16■■□□□ 1.94
PCDHA3Q9Y5H8 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC27.16■■□□□ 1.94
PCDHA3Q9Y5H8 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC27.16■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms