Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHGA9Q9Y5G4 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHGA9Q9Y5G4 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
PCDHGA9Q9Y5G4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
PCDHGA9Q9Y5G4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHGA9Q9Y5G4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHGA9Q9Y5G4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHGA9Q9Y5G4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHGA9Q9Y5G4 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC24.65■■□□□ 1.54
PCDHGA9Q9Y5G4 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHGA9Q9Y5G4 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA9Q9Y5G4 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA9Q9Y5G4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
PCDHGA9Q9Y5G4 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC24.62■■□□□ 1.53
PCDHGA9Q9Y5G4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHGA9Q9Y5G4 CR559946.2-201ENST00000623684 991 ntBASIC24.61■■□□□ 1.53
PCDHGA9Q9Y5G4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA9Q9Y5G4 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA9Q9Y5G4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
PCDHGA9Q9Y5G4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA9Q9Y5G4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA9Q9Y5G4 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA9Q9Y5G4 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA9Q9Y5G4 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA9Q9Y5G4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC24.59■■□□□ 1.53
PCDHGA9Q9Y5G4 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.59■■□□□ 1.53
PCDHGA9Q9Y5G4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.59■■□□□ 1.53
PCDHGA9Q9Y5G4 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHGA9Q9Y5G4 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHGA9Q9Y5G4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHGA9Q9Y5G4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.58■■□□□ 1.53
PCDHGA9Q9Y5G4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.57■■□□□ 1.52
PCDHGA9Q9Y5G4 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHGA9Q9Y5G4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
PCDHGA9Q9Y5G4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.55■■□□□ 1.52
PCDHGA9Q9Y5G4 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHGA9Q9Y5G4 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHGA9Q9Y5G4 HSD17B1P1-201ENST00000590052 955 ntBASIC24.54■■□□□ 1.52
PCDHGA9Q9Y5G4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC24.54■■□□□ 1.52
PCDHGA9Q9Y5G4 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.54■■□□□ 1.52
PCDHGA9Q9Y5G4 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
PCDHGA9Q9Y5G4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
PCDHGA9Q9Y5G4 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHGA9Q9Y5G4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PCDHGA9Q9Y5G4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHGA9Q9Y5G4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHGA9Q9Y5G4 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHGA9Q9Y5G4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
PCDHGA9Q9Y5G4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.5■■□□□ 1.51
PCDHGA9Q9Y5G4 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PCDHGA9Q9Y5G4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
PCDHGA9Q9Y5G4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHGA9Q9Y5G4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHGA9Q9Y5G4 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.5
PCDHGA9Q9Y5G4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 DUX4L13-201ENST00000554103 1267 ntBASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 DUX4L15-201ENST00000611059 1267 ntBASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 DUX4L23-201ENST00000615195 1269 ntBASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 DUX4L24-201ENST00000617576 1269 ntBASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 DUX4L22-201ENST00000618238 1269 ntBASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 DUX4L20-201ENST00000619712 1269 ntBASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 DUX4L21-201ENST00000622058 1269 ntBASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 DUX4L10-201ENST00000622460 1267 ntBASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 DUX4L25-201ENST00000624915 1269 ntBASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHGA9Q9Y5G4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.43■■□□□ 1.5
PCDHGA9Q9Y5G4 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.43■■□□□ 1.5
PCDHGA9Q9Y5G4 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC24.43■■□□□ 1.5
PCDHGA9Q9Y5G4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHGA9Q9Y5G4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC24.42■■□□□ 1.5
PCDHGA9Q9Y5G4 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHGA9Q9Y5G4 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.41■■□□□ 1.5
PCDHGA9Q9Y5G4 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.41■■□□□ 1.5
PCDHGA9Q9Y5G4 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC24.41■■□□□ 1.5
PCDHGA9Q9Y5G4 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHGA9Q9Y5G4 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.41■■□□□ 1.5
PCDHGA9Q9Y5G4 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC24.41■■□□□ 1.5
PCDHGA9Q9Y5G4 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
PCDHGA9Q9Y5G4 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC24.4■■□□□ 1.5
PCDHGA9Q9Y5G4 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHGA9Q9Y5G4 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHGA9Q9Y5G4 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PCDHGA9Q9Y5G4 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
PCDHGA9Q9Y5G4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGA9Q9Y5G4 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGA9Q9Y5G4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGA9Q9Y5G4 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGA9Q9Y5G4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC24.36■■□□□ 1.49
PCDHGA9Q9Y5G4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGA9Q9Y5G4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.36■■□□□ 1.49
PCDHGA9Q9Y5G4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
PCDHGA9Q9Y5G4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGA9Q9Y5G4 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHGA9Q9Y5G4 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHGA9Q9Y5G4 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA9Q9Y5G4 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.34■■□□□ 1.49
PCDHGA9Q9Y5G4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.34■■□□□ 1.49
PCDHGA9Q9Y5G4 METRNL-202ENST00000570778 967 ntTSL 5 BASIC24.34■■□□□ 1.49
PCDHGA9Q9Y5G4 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA9Q9Y5G4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms