Protein–RNA interactions for Protein: Q96PT4

DUX3, Putative double homeobox protein 3, humanhuman

Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DUX3Q96PT4 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
DUX3Q96PT4 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
DUX3Q96PT4 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.39■□□□□ 0.85
DUX3Q96PT4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
DUX3Q96PT4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.39■□□□□ 0.85
DUX3Q96PT4 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
DUX3Q96PT4 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.38■□□□□ 0.85
DUX3Q96PT4 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
DUX3Q96PT4 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
DUX3Q96PT4 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
DUX3Q96PT4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
DUX3Q96PT4 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
DUX3Q96PT4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
DUX3Q96PT4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.36■□□□□ 0.85
DUX3Q96PT4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.36■□□□□ 0.85
DUX3Q96PT4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
DUX3Q96PT4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
DUX3Q96PT4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
DUX3Q96PT4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
DUX3Q96PT4 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
DUX3Q96PT4 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
DUX3Q96PT4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
DUX3Q96PT4 HLA-V-202ENST00000446817 847 ntBASIC20.34■□□□□ 0.85
DUX3Q96PT4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
DUX3Q96PT4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.34■□□□□ 0.85
DUX3Q96PT4 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
DUX3Q96PT4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
DUX3Q96PT4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.33■□□□□ 0.85
DUX3Q96PT4 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
DUX3Q96PT4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
DUX3Q96PT4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
DUX3Q96PT4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
DUX3Q96PT4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
DUX3Q96PT4 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
DUX3Q96PT4 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
DUX3Q96PT4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
DUX3Q96PT4 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
DUX3Q96PT4 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DUX3Q96PT4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
DUX3Q96PT4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DUX3Q96PT4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
DUX3Q96PT4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.28■□□□□ 0.84
DUX3Q96PT4 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
DUX3Q96PT4 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
DUX3Q96PT4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
DUX3Q96PT4 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
DUX3Q96PT4 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
DUX3Q96PT4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.26■□□□□ 0.83
DUX3Q96PT4 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
DUX3Q96PT4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
DUX3Q96PT4 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.25■□□□□ 0.83
DUX3Q96PT4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.25■□□□□ 0.83
DUX3Q96PT4 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC20.25■□□□□ 0.83
DUX3Q96PT4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DUX3Q96PT4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
DUX3Q96PT4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
DUX3Q96PT4 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
DUX3Q96PT4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DUX3Q96PT4 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
DUX3Q96PT4 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DUX3Q96PT4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
DUX3Q96PT4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DUX3Q96PT4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.22■□□□□ 0.83
DUX3Q96PT4 AC010864.1-201ENST00000609407 1511 ntBASIC20.22■□□□□ 0.83
DUX3Q96PT4 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC20.21■□□□□ 0.83
DUX3Q96PT4 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
DUX3Q96PT4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
DUX3Q96PT4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.21■□□□□ 0.83
DUX3Q96PT4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.21■□□□□ 0.83
DUX3Q96PT4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
DUX3Q96PT4 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
DUX3Q96PT4 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
DUX3Q96PT4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
DUX3Q96PT4 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
DUX3Q96PT4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC20.18■□□□□ 0.82
DUX3Q96PT4 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.18■□□□□ 0.82
DUX3Q96PT4 DUX4L11-201ENST00000611504 1267 ntBASIC20.17■□□□□ 0.82
DUX3Q96PT4 DUX4L12-201ENST00000614593 1267 ntBASIC20.17■□□□□ 0.82
DUX3Q96PT4 DUX4L14-201ENST00000621227 1267 ntBASIC20.17■□□□□ 0.82
DUX3Q96PT4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
DUX3Q96PT4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
DUX3Q96PT4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.15■□□□□ 0.82
DUX3Q96PT4 AC016575.1-201ENST00000607026 382 ntBASIC20.15■□□□□ 0.82
DUX3Q96PT4 LINC01971-201ENST00000617888 1048 ntBASIC20.15■□□□□ 0.82
DUX3Q96PT4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
DUX3Q96PT4 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
DUX3Q96PT4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.13■□□□□ 0.81
DUX3Q96PT4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.13■□□□□ 0.81
DUX3Q96PT4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
DUX3Q96PT4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.12■□□□□ 0.81
DUX3Q96PT4 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
DUX3Q96PT4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
DUX3Q96PT4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.11■□□□□ 0.81
DUX3Q96PT4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.11■□□□□ 0.81
DUX3Q96PT4 MIR3648-2-201ENST00000581792 180 ntBASIC20.11■□□□□ 0.81
DUX3Q96PT4 MIR3648-1-201ENST00000615959 180 ntBASIC20.11■□□□□ 0.81
DUX3Q96PT4 CR559946.2-201ENST00000623684 991 ntBASIC20.11■□□□□ 0.81
DUX3Q96PT4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
DUX3Q96PT4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
DUX3Q96PT4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms