Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
SYNE1Q8NF91 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
SYNE1Q8NF91 DUX4L13-201ENST00000554103 1267 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 AC016575.1-201ENST00000607026 382 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 DUX4L15-201ENST00000611059 1267 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 DUX4L23-201ENST00000615195 1269 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 DUX4L24-201ENST00000617576 1269 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 DUX4L22-201ENST00000618238 1269 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 DUX4L20-201ENST00000619712 1269 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 DUX4L21-201ENST00000622058 1269 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 DUX4L10-201ENST00000622460 1267 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 DUX4L25-201ENST00000624915 1269 ntBASIC8.02□□□□□ -1.13
SYNE1Q8NF91 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
SYNE1Q8NF91 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC8.02□□□□□ -1.13
SYNE1Q8NF91 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
SYNE1Q8NF91 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
SYNE1Q8NF91 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
SYNE1Q8NF91 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
SYNE1Q8NF91 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.13
SYNE1Q8NF91 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
SYNE1Q8NF91 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC8.01□□□□□ -1.13
SYNE1Q8NF91 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC8.01□□□□□ -1.13
SYNE1Q8NF91 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
SYNE1Q8NF91 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
SYNE1Q8NF91 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
SYNE1Q8NF91 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
SYNE1Q8NF91 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC8□□□□□ -1.13
SYNE1Q8NF91 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
SYNE1Q8NF91 AL161658.1-201ENST00000623641 1967 ntBASIC7.99□□□□□ -1.13
SYNE1Q8NF91 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
SYNE1Q8NF91 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
SYNE1Q8NF91 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
SYNE1Q8NF91 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
SYNE1Q8NF91 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
SYNE1Q8NF91 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
SYNE1Q8NF91 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
SYNE1Q8NF91 AC108673.1-201ENST00000510422 1159 ntBASIC7.99□□□□□ -1.13
SYNE1Q8NF91 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 LINC01971-201ENST00000617888 1048 ntBASIC7.98□□□□□ -1.13
SYNE1Q8NF91 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
SYNE1Q8NF91 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
SYNE1Q8NF91 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
SYNE1Q8NF91 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
SYNE1Q8NF91 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
SYNE1Q8NF91 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
SYNE1Q8NF91 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC7.97□□□□□ -1.13
SYNE1Q8NF91 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
SYNE1Q8NF91 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC7.96□□□□□ -1.13
SYNE1Q8NF91 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
SYNE1Q8NF91 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
SYNE1Q8NF91 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC7.96□□□□□ -1.14
SYNE1Q8NF91 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.14
SYNE1Q8NF91 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
SYNE1Q8NF91 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC7.96□□□□□ -1.14
SYNE1Q8NF91 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
SYNE1Q8NF91 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
SYNE1Q8NF91 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC7.96□□□□□ -1.14
SYNE1Q8NF91 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC7.96□□□□□ -1.14
SYNE1Q8NF91 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 BRD4-212ENST00000630599 726 ntTSL 2 BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
SYNE1Q8NF91 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC7.94□□□□□ -1.14
SYNE1Q8NF91 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC7.94□□□□□ -1.14
SYNE1Q8NF91 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
SYNE1Q8NF91 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
SYNE1Q8NF91 CHML-204ENST00000638121 920 ntTSL 2 BASIC7.94□□□□□ -1.14
SYNE1Q8NF91 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC7.93□□□□□ -1.14
SYNE1Q8NF91 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC7.93□□□□□ -1.14
SYNE1Q8NF91 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
SYNE1Q8NF91 HES6-205ENST00000409356 528 ntTSL 2 BASIC7.93□□□□□ -1.14
SYNE1Q8NF91 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
SYNE1Q8NF91 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC7.92□□□□□ -1.14
SYNE1Q8NF91 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC7.92□□□□□ -1.14
SYNE1Q8NF91 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC7.92□□□□□ -1.14
SYNE1Q8NF91 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
SYNE1Q8NF91 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
SYNE1Q8NF91 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC7.92□□□□□ -1.14
SYNE1Q8NF91 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
SYNE1Q8NF91 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC7.92□□□□□ -1.14
SYNE1Q8NF91 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 SRP68-213ENST00000629930 165 ntTSL 5 BASIC7.91□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms