RNA–Protein interactions for RNA: ENST00000218200.12

FMR1-201, Transcript of fragile X mental retardation 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene FMR1, Length 4,333 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FMR1-201ENST00000218200 NISCHQ9Y2I1 1504 aa38.61■■■■□ 3.77
FMR1-201ENST00000218200 DCAF8L2P0C7V8 631 aa35.79■■■■□ 3.32
FMR1-201ENST00000218200 SUPT5HO00267 1087 aaKnown RBP35.05■■■■□ 3.2
FMR1-201ENST00000218200 SHROOM4Q9ULL8 1493 aa34.77■■■■□ 3.16
FMR1-201ENST00000218200 EHMT2Q96KQ7 1210 aa34.12■■■■□ 3.05
FMR1-201ENST00000218200 PCGF6Q9BYE7 350 aa33.53■■■□□ 2.96
FMR1-201ENST00000218200 FAM9AQ8IZU1 332 aaPredicted RBP33.11■■■□□ 2.89
FMR1-201ENST00000218200 TTBK1Q5TCY1 1321 aaPredicted RBP32.98■■■□□ 2.87
FMR1-201ENST00000218200 ZCCHC6Q5VYS8 1495 aaKnown RBP32.32■■■□□ 2.76
FMR1-201ENST00000218200 CHIC1Q5VXU3 224 aa32.29■■■□□ 2.76
FMR1-201ENST00000218200 PPARGC1BQ86YN6 1023 aaKnown RBP32.22■■■□□ 2.75
FMR1-201ENST00000218200 CCDC180Q9P1Z9 1646 aa32.14■■■□□ 2.74
FMR1-201ENST00000218200 CCER1Q8TC90 406 aaPredicted RBP32.12■■■□□ 2.73
FMR1-201ENST00000218200 RANGAP1P46060 587 aaPredicted RBP32.09■■■□□ 2.73
FMR1-201ENST00000218200 PELP1Q8IZL8 1130 aaKnown RBP32.05■■■□□ 2.72
FMR1-201ENST00000218200 TRIM41Q8WV44 630 aa32.04■■■□□ 2.72
FMR1-201ENST00000218200 HRCP23327 699 aa32.02■■■□□ 2.72
FMR1-201ENST00000218200 APLP2Q06481 763 aa32■■■□□ 2.71
FMR1-201ENST00000218200 YTHDC1Q96MU7 727 aaKnown RBP31.97■■■□□ 2.71
FMR1-201ENST00000218200 CENPBP07199 599 aaPredicted RBP31.92■■■□□ 2.7
FMR1-201ENST00000218200 LOC105371045A0A1W2PR82 267 aa31.91■■■□□ 2.7
FMR1-201ENST00000218200 ZEB1P37275 1124 aaPredicted RBP31.8■■■□□ 2.68
FMR1-201ENST00000218200 ABCC9O60706 1549 aa31.78■■■□□ 2.68
FMR1-201ENST00000218200 TRIM26Q12899 539 aaPredicted RBP31.53■■■□□ 2.64
FMR1-201ENST00000218200 UBTFP17480 764 aaKnown RBP31.44■■■□□ 2.62
FMR1-201ENST00000218200 SCRIBQ14160 1630 aa31.24■■■□□ 2.59
FMR1-201ENST00000218200 ATP1B4Q9UN42 357 aaPredicted RBP31.19■■■□□ 2.58
FMR1-201ENST00000218200 ERICH6Q7L0X2 663 aa31.15■■■□□ 2.58
FMR1-201ENST00000218200 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.08■■■□□ 2.57
FMR1-201ENST00000218200 DCAF1Q9Y4B6 1507 aa31.03■■■□□ 2.56
FMR1-201ENST00000218200 PABPN1Q86U42 306 aaKnown RBP eCLIP31■■■□□ 2.55
FMR1-201ENST00000218200 MYO15BQ96JP2 1530 aa30.97■■■□□ 2.55
FMR1-201ENST00000218200 HNRNPUL2Q1KMD3 747 aaKnown RBP30.92■■■□□ 2.54
FMR1-201ENST00000218200 ITGAEP38570 1179 aa30.84■■■□□ 2.53
FMR1-201ENST00000218200 NEFLP07196 543 aa30.82■■■□□ 2.52
FMR1-201ENST00000218200 RSF1Q96T23 1441 aaPredicted RBP30.77■■■□□ 2.52
FMR1-201ENST00000218200 DIEXFQ68CQ4 756 aaKnown RBP30.72■■■□□ 2.51
FMR1-201ENST00000218200 MYT1Q01538 1121 aa30.67■■■□□ 2.5
FMR1-201ENST00000218200 GTF3C3Q9Y5Q9 886 aa30.6■■■□□ 2.49
FMR1-201ENST00000218200 CNGB1Q14028 1251 aaPredicted RBP30.56■■■□□ 2.48
FMR1-201ENST00000218200 NACADO15069 1562 aa30.49■■■□□ 2.47
FMR1-201ENST00000218200 CECR2Q9BXF3 1484 aa30.36■■■□□ 2.45
FMR1-201ENST00000218200 RB1CC1Q8TDY2 1594 aa30.32■■■□□ 2.44
FMR1-201ENST00000218200 BCANQ96GW7 911 aa30.28■■■□□ 2.44
FMR1-201ENST00000218200 POLR3GLQ9BT43 218 aa30.27■■■□□ 2.44
FMR1-201ENST00000218200 CSRNP3Q8WYN3 585 aa30.13■■■□□ 2.41
FMR1-201ENST00000218200 ACIN1Q9UKV3 1341 aaKnown RBP30.06■■■□□ 2.4
FMR1-201ENST00000218200 MROH2BQ7Z745 1585 aa30.05■■■□□ 2.4
FMR1-201ENST00000218200 BAZ1AQ9NRL2 1556 aaPredicted RBP29.91■■■□□ 2.38
FMR1-201ENST00000218200 NEUROD1Q13562 356 aa29.85■■■□□ 2.37
FMR1-201ENST00000218200 SCAF1Q9H7N4 1312 aaKnown RBP29.81■■■□□ 2.36
FMR1-201ENST00000218200 ZNF316A6NFI3 1004 aaPredicted RBP29.8■■■□□ 2.36
FMR1-201ENST00000218200 WIZO95785 1651 aa29.7■■■□□ 2.35
FMR1-201ENST00000218200 FAM50AQ14320 339 aaKnown RBP29.68■■■□□ 2.34
FMR1-201ENST00000218200 DAXXQ9UER7 740 aaPredicted RBP29.59■■■□□ 2.33
FMR1-201ENST00000218200 CCDC88BA6NC98 1476 aa29.55■■■□□ 2.32
FMR1-201ENST00000218200 WRNQ14191 1432 aaPredicted RBP eCLIP29.5■■■□□ 2.31
FMR1-201ENST00000218200 CEP162Q5TB80 1403 aa29.47■■■□□ 2.31
FMR1-201ENST00000218200 ABCC8Q09428 1581 aa29.44■■■□□ 2.3
FMR1-201ENST00000218200 BAZ1BQ9UIG0 1483 aaKnown RBP29.44■■■□□ 2.3
FMR1-201ENST00000218200 SOGA1O94964 1423 aa29.43■■■□□ 2.3
FMR1-201ENST00000218200 EEA1Q15075 1411 aa29.41■■■□□ 2.3
FMR1-201ENST00000218200 RTL5Q5HYW3 569 aaPredicted RBP29.4■■■□□ 2.3
FMR1-201ENST00000218200 TOP2AP11388 1531 aaKnown RBP29.34■■■□□ 2.29
FMR1-201ENST00000218200 TNIKQ9UKE5 1360 aa29.34■■■□□ 2.29
FMR1-201ENST00000218200 TRIM52Q96A61 297 aa29.33■■■□□ 2.29
FMR1-201ENST00000218200 GOLGA3Q08378 1498 aa29.3■■■□□ 2.28
FMR1-201ENST00000218200 ANP32CO43423 234 aa29.3■■■□□ 2.28
FMR1-201ENST00000218200 CLIP1P30622 1438 aa29.28■■■□□ 2.28
FMR1-201ENST00000218200 ZNF326Q5BKZ1 582 aaKnown RBP29.26■■■□□ 2.27
FMR1-201ENST00000218200 FKBP8Q14318 412 aa29.25■■■□□ 2.27
FMR1-201ENST00000218200 P3H3Q8IVL6 736 aa29.24■■■□□ 2.27
FMR1-201ENST00000218200 SMARCA4P51532 1647 aa29.24■■■□□ 2.27
FMR1-201ENST00000218200 MIER1Q8N108 512 aa29.24■■■□□ 2.27
FMR1-201ENST00000218200 MYT1LQ9UL68 1186 aa29.22■■■□□ 2.27
FMR1-201ENST00000218200 CDK11AQ9UQ88 783 aaPredicted RBP29.21■■■□□ 2.27
FMR1-201ENST00000218200 CLSPNQ9HAW4 1339 aa29.2■■■□□ 2.26
FMR1-201ENST00000218200 DDX10Q13206 875 aaKnown RBP29.11■■■□□ 2.25
FMR1-201ENST00000218200 CEP164Q9UPV0 1460 aa29.11■■■□□ 2.25
FMR1-201ENST00000218200 SLC4A1APQ9BWU0 796 aaKnown RBP29.09■■■□□ 2.25
FMR1-201ENST00000218200 ARID3CA6NKF2 412 aa29.06■■■□□ 2.24
FMR1-201ENST00000218200 HIRIP3Q9BW71 556 aaPredicted RBP29.03■■■□□ 2.24
FMR1-201ENST00000218200 SMARCA2P51531 1590 aa28.97■■■□□ 2.23
FMR1-201ENST00000218200 ATAD2BQ9ULI0 1458 aa28.97■■■□□ 2.23
FMR1-201ENST00000218200 RUSC2Q8N2Y8 1516 aa28.97■■■□□ 2.23
FMR1-201ENST00000218200 NPM2Q86SE8 214 aaKnown RBP28.93■■■□□ 2.22
FMR1-201ENST00000218200 IRX6P78412 446 aaPredicted RBP28.91■■■□□ 2.22
FMR1-201ENST00000218200 HNRNPUQ00839 825 aaKnown RBP eCLIP28.88■■■□□ 2.21
FMR1-201ENST00000218200 KIF27Q86VH2 1401 aa28.88■■■□□ 2.21
FMR1-201ENST00000218200 BCL11AQ9H165 835 aa28.84■■■□□ 2.21
FMR1-201ENST00000218200 FAM9BQ8IZU0 186 aa28.77■■■□□ 2.2
FMR1-201ENST00000218200 SALL2Q9Y467 1007 aaPredicted RBP28.76■■■□□ 2.19
FMR1-201ENST00000218200 NBR1Q14596 966 aa28.73■■■□□ 2.19
FMR1-201ENST00000218200 SENP3-EIF4A1A0A087X0R7 540 aa28.73■■■□□ 2.19
FMR1-201ENST00000218200 VPS8Q8N3P4 1428 aa28.69■■■□□ 2.18
FMR1-201ENST00000218200 RAPGEF2Q9Y4G8 1499 aa28.63■■■□□ 2.17
FMR1-201ENST00000218200 ANP32AP39687 249 aaKnown RBP28.62■■■□□ 2.17
FMR1-201ENST00000218200 EIF5BO60841 1220 aaKnown RBP28.61■■■□□ 2.17
FMR1-201ENST00000218200 CUX2O14529 1486 aa28.58■■■□□ 2.17
FMR1-201ENST00000218200 FBLN2P98095 1184 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms