RNA–Protein interactions for RNA: ENST00000440235.6

FMR1-208, Transcript of fragile X mental retardation 1, humanhuman

TSL 1 (best) BASIC

Gene FMR1, Length 4,271 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FMR1-208ENST00000440235 NISCHQ9Y2I1 1504 aa37.89■■■■□ 3.66
FMR1-208ENST00000440235 DCAF8L2P0C7V8 631 aa35.46■■■■□ 3.27
FMR1-208ENST00000440235 SUPT5HO00267 1087 aaKnown RBP34.78■■■■□ 3.16
FMR1-208ENST00000440235 SHROOM4Q9ULL8 1493 aa34.22■■■■□ 3.07
FMR1-208ENST00000440235 EHMT2Q96KQ7 1210 aa33.88■■■■□ 3.01
FMR1-208ENST00000440235 PCGF6Q9BYE7 350 aa33.28■■■□□ 2.92
FMR1-208ENST00000440235 FAM9AQ8IZU1 332 aaPredicted RBP32.85■■■□□ 2.85
FMR1-208ENST00000440235 TTBK1Q5TCY1 1321 aaPredicted RBP32.73■■■□□ 2.83
FMR1-208ENST00000440235 PPARGC1BQ86YN6 1023 aaKnown RBP32.04■■■□□ 2.72
FMR1-208ENST00000440235 RANGAP1P46060 587 aaPredicted RBP31.83■■■□□ 2.69
FMR1-208ENST00000440235 HRCP23327 699 aa31.8■■■□□ 2.68
FMR1-208ENST00000440235 CCER1Q8TC90 406 aaPredicted RBP31.8■■■□□ 2.68
FMR1-208ENST00000440235 ZCCHC6Q5VYS8 1495 aaKnown RBP31.79■■■□□ 2.68
FMR1-208ENST00000440235 LOC105371045A0A1W2PR82 267 aa31.74■■■□□ 2.67
FMR1-208ENST00000440235 YTHDC1Q96MU7 727 aaKnown RBP31.7■■■□□ 2.66
FMR1-208ENST00000440235 TRIM41Q8WV44 630 aa31.69■■■□□ 2.66
FMR1-208ENST00000440235 CCDC180Q9P1Z9 1646 aa31.68■■■□□ 2.66
FMR1-208ENST00000440235 APLP2Q06481 763 aa31.58■■■□□ 2.65
FMR1-208ENST00000440235 PELP1Q8IZL8 1130 aaKnown RBP31.53■■■□□ 2.64
FMR1-208ENST00000440235 CENPBP07199 599 aaPredicted RBP31.52■■■□□ 2.64
FMR1-208ENST00000440235 CHIC1Q5VXU3 224 aa31.44■■■□□ 2.62
FMR1-208ENST00000440235 ZEB1P37275 1124 aaPredicted RBP31.42■■■□□ 2.62
FMR1-208ENST00000440235 TRIM26Q12899 539 aaPredicted RBP31.25■■■□□ 2.59
FMR1-208ENST00000440235 UBTFP17480 764 aaKnown RBP31.13■■■□□ 2.57
FMR1-208ENST00000440235 ABCC9O60706 1549 aa31.03■■■□□ 2.56
FMR1-208ENST00000440235 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.87■■■□□ 2.53
FMR1-208ENST00000440235 ATP1B4Q9UN42 357 aaPredicted RBP30.86■■■□□ 2.53
FMR1-208ENST00000440235 ERICH6Q7L0X2 663 aa30.7■■■□□ 2.51
FMR1-208ENST00000440235 HNRNPUL2Q1KMD3 747 aaKnown RBP30.66■■■□□ 2.5
FMR1-208ENST00000440235 SCRIBQ14160 1630 aa30.66■■■□□ 2.5
FMR1-208ENST00000440235 ITGAEP38570 1179 aa30.57■■■□□ 2.48
FMR1-208ENST00000440235 DCAF1Q9Y4B6 1507 aa30.51■■■□□ 2.48
FMR1-208ENST00000440235 MYO15BQ96JP2 1530 aa30.51■■■□□ 2.47
FMR1-208ENST00000440235 DIEXFQ68CQ4 756 aaKnown RBP30.44■■■□□ 2.46
FMR1-208ENST00000440235 NEFLP07196 543 aa30.4■■■□□ 2.46
FMR1-208ENST00000440235 GTF3C3Q9Y5Q9 886 aa30.36■■■□□ 2.45
FMR1-208ENST00000440235 CNGB1Q14028 1251 aaPredicted RBP30.29■■■□□ 2.44
FMR1-208ENST00000440235 MYT1Q01538 1121 aa30.19■■■□□ 2.42
FMR1-208ENST00000440235 RSF1Q96T23 1441 aaPredicted RBP30.15■■■□□ 2.42
FMR1-208ENST00000440235 PABPN1Q86U42 306 aaKnown RBP eCLIP30.14■■■□□ 2.42
FMR1-208ENST00000440235 BCANQ96GW7 911 aa30.03■■■□□ 2.4
FMR1-208ENST00000440235 POLR3GLQ9BT43 218 aa29.95■■■□□ 2.38
FMR1-208ENST00000440235 NACADO15069 1562 aa29.87■■■□□ 2.37
FMR1-208ENST00000440235 CECR2Q9BXF3 1484 aa29.82■■■□□ 2.36
FMR1-208ENST00000440235 ACIN1Q9UKV3 1341 aaKnown RBP29.81■■■□□ 2.36
FMR1-208ENST00000440235 RB1CC1Q8TDY2 1594 aa29.67■■■□□ 2.34
FMR1-208ENST00000440235 SCAF1Q9H7N4 1312 aaKnown RBP29.65■■■□□ 2.34
FMR1-208ENST00000440235 NEUROD1Q13562 356 aa29.62■■■□□ 2.33
FMR1-208ENST00000440235 MROH2BQ7Z745 1585 aa29.54■■■□□ 2.32
FMR1-208ENST00000440235 ZNF316A6NFI3 1004 aaPredicted RBP29.53■■■□□ 2.32
FMR1-208ENST00000440235 FAM50AQ14320 339 aaKnown RBP29.4■■■□□ 2.3
FMR1-208ENST00000440235 BAZ1AQ9NRL2 1556 aaPredicted RBP29.28■■■□□ 2.28
FMR1-208ENST00000440235 WIZO95785 1651 aa29.27■■■□□ 2.28
FMR1-208ENST00000440235 CSRNP3Q8WYN3 585 aa29.21■■■□□ 2.27
FMR1-208ENST00000440235 DAXXQ9UER7 740 aaPredicted RBP29.14■■■□□ 2.26
FMR1-208ENST00000440235 MIER1Q8N108 512 aa29.05■■■□□ 2.24
FMR1-208ENST00000440235 TRIM52Q96A61 297 aa29.02■■■□□ 2.24
FMR1-208ENST00000440235 RTL5Q5HYW3 569 aaPredicted RBP29■■■□□ 2.23
FMR1-208ENST00000440235 FKBP8Q14318 412 aa28.99■■■□□ 2.23
FMR1-208ENST00000440235 P3H3Q8IVL6 736 aa28.99■■■□□ 2.23
FMR1-208ENST00000440235 ZNF326Q5BKZ1 582 aaKnown RBP28.97■■■□□ 2.23
FMR1-208ENST00000440235 ANP32CO43423 234 aa28.97■■■□□ 2.23
FMR1-208ENST00000440235 CCDC88BA6NC98 1476 aa28.96■■■□□ 2.23
FMR1-208ENST00000440235 ABCC8Q09428 1581 aa28.92■■■□□ 2.22
FMR1-208ENST00000440235 DDX10Q13206 875 aaKnown RBP28.87■■■□□ 2.21
FMR1-208ENST00000440235 CDK11AQ9UQ88 783 aaPredicted RBP28.86■■■□□ 2.21
FMR1-208ENST00000440235 HIRIP3Q9BW71 556 aaPredicted RBP28.85■■■□□ 2.21
FMR1-208ENST00000440235 ARID3CA6NKF2 412 aa28.84■■■□□ 2.21
FMR1-208ENST00000440235 MYT1LQ9UL68 1186 aa28.84■■■□□ 2.21
FMR1-208ENST00000440235 CLSPNQ9HAW4 1339 aa28.81■■■□□ 2.2
FMR1-208ENST00000440235 SOGA1O94964 1423 aa28.8■■■□□ 2.2
FMR1-208ENST00000440235 TOP2AP11388 1531 aaKnown RBP28.8■■■□□ 2.2
FMR1-208ENST00000440235 SMARCA4P51532 1647 aa28.77■■■□□ 2.2
FMR1-208ENST00000440235 WRNQ14191 1432 aaPredicted RBP eCLIP28.76■■■□□ 2.2
FMR1-208ENST00000440235 CEP162Q5TB80 1403 aa28.74■■■□□ 2.19
FMR1-208ENST00000440235 SLC4A1APQ9BWU0 796 aaKnown RBP28.74■■■□□ 2.19
FMR1-208ENST00000440235 BAZ1BQ9UIG0 1483 aaKnown RBP28.72■■■□□ 2.19
FMR1-208ENST00000440235 IRX6P78412 446 aaPredicted RBP28.71■■■□□ 2.19
FMR1-208ENST00000440235 NPM2Q86SE8 214 aaKnown RBP28.64■■■□□ 2.17
FMR1-208ENST00000440235 HNRNPUQ00839 825 aaKnown RBP eCLIP28.6■■■□□ 2.17
FMR1-208ENST00000440235 EEA1Q15075 1411 aa28.59■■■□□ 2.17
FMR1-208ENST00000440235 SENP3-EIF4A1A0A087X0R7 540 aa28.57■■■□□ 2.16
FMR1-208ENST00000440235 TNIKQ9UKE5 1360 aa28.57■■■□□ 2.16
FMR1-208ENST00000440235 BCL11AQ9H165 835 aa28.54■■■□□ 2.16
FMR1-208ENST00000440235 GOLGA3Q08378 1498 aa28.54■■■□□ 2.16
FMR1-208ENST00000440235 SMARCA2P51531 1590 aa28.52■■■□□ 2.16
FMR1-208ENST00000440235 SALL2Q9Y467 1007 aaPredicted RBP28.51■■■□□ 2.15
FMR1-208ENST00000440235 FAM9BQ8IZU0 186 aa28.51■■■□□ 2.15
FMR1-208ENST00000440235 CLIP1P30622 1438 aa28.47■■■□□ 2.15
FMR1-208ENST00000440235 NBR1Q14596 966 aa28.46■■■□□ 2.15
FMR1-208ENST00000440235 RUSC2Q8N2Y8 1516 aa28.46■■■□□ 2.15
FMR1-208ENST00000440235 ATAD2BQ9ULI0 1458 aa28.39■■■□□ 2.13
FMR1-208ENST00000440235 CEP164Q9UPV0 1460 aa28.35■■■□□ 2.13
FMR1-208ENST00000440235 EIF5BO60841 1220 aaKnown RBP28.28■■■□□ 2.12
FMR1-208ENST00000440235 ANP32AP39687 249 aaKnown RBP28.26■■■□□ 2.11
FMR1-208ENST00000440235 CHIC2Q9UKJ5 165 aa28.26■■■□□ 2.11
FMR1-208ENST00000440235 ZNF777Q9ULD5 760 aaPredicted RBP28.19■■■□□ 2.1
FMR1-208ENST00000440235 FBLN2P98095 1184 aa28.18■■■□□ 2.1
FMR1-208ENST00000440235 TONSLQ96HA7 1378 aa28.18■■■□□ 2.1
FMR1-208ENST00000440235 BICRAQ9NZM4 1560 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms