Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CSMD3Q7Z407 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC18.78■□□□□ 0.6
CSMD3Q7Z407 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC18.77■□□□□ 0.6
CSMD3Q7Z407 RNF126P1-201ENST00000567452 1320 ntBASIC18.77■□□□□ 0.6
CSMD3Q7Z407 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CSMD3Q7Z407 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC18.76■□□□□ 0.59
CSMD3Q7Z407 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CSMD3Q7Z407 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC18.76■□□□□ 0.59
CSMD3Q7Z407 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CSMD3Q7Z407 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
CSMD3Q7Z407 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CSMD3Q7Z407 HES6-205ENST00000409356 528 ntTSL 2 BASIC18.73■□□□□ 0.59
CSMD3Q7Z407 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
CSMD3Q7Z407 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CSMD3Q7Z407 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CSMD3Q7Z407 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CSMD3Q7Z407 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CSMD3Q7Z407 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CSMD3Q7Z407 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CSMD3Q7Z407 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CSMD3Q7Z407 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CSMD3Q7Z407 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CSMD3Q7Z407 GPX1-201ENST00000419349 1106 ntBASIC18.71■□□□□ 0.59
CSMD3Q7Z407 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CSMD3Q7Z407 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CSMD3Q7Z407 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC18.7■□□□□ 0.58
CSMD3Q7Z407 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CSMD3Q7Z407 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC18.69■□□□□ 0.58
CSMD3Q7Z407 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.69■□□□□ 0.58
CSMD3Q7Z407 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CSMD3Q7Z407 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CSMD3Q7Z407 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC18.68■□□□□ 0.58
CSMD3Q7Z407 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CSMD3Q7Z407 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CSMD3Q7Z407 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC18.67■□□□□ 0.58
CSMD3Q7Z407 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
CSMD3Q7Z407 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC18.67■□□□□ 0.58
CSMD3Q7Z407 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CSMD3Q7Z407 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CSMD3Q7Z407 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CSMD3Q7Z407 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CSMD3Q7Z407 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CSMD3Q7Z407 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CSMD3Q7Z407 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC18.64■□□□□ 0.58
CSMD3Q7Z407 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CSMD3Q7Z407 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CSMD3Q7Z407 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC18.63■□□□□ 0.57
CSMD3Q7Z407 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CSMD3Q7Z407 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC18.63■□□□□ 0.57
CSMD3Q7Z407 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.63■□□□□ 0.57
CSMD3Q7Z407 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CSMD3Q7Z407 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC18.63■□□□□ 0.57
CSMD3Q7Z407 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CSMD3Q7Z407 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CSMD3Q7Z407 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC18.62■□□□□ 0.57
CSMD3Q7Z407 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CSMD3Q7Z407 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CSMD3Q7Z407 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CSMD3Q7Z407 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CSMD3Q7Z407 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSMD3Q7Z407 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CSMD3Q7Z407 NTF6A-201ENST00000591175 560 ntBASIC18.6■□□□□ 0.57
CSMD3Q7Z407 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CSMD3Q7Z407 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CSMD3Q7Z407 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CSMD3Q7Z407 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CSMD3Q7Z407 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC18.59■□□□□ 0.57
CSMD3Q7Z407 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CSMD3Q7Z407 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CSMD3Q7Z407 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CSMD3Q7Z407 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CSMD3Q7Z407 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CSMD3Q7Z407 CHML-204ENST00000638121 920 ntTSL 2 BASIC18.59■□□□□ 0.57
CSMD3Q7Z407 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CSMD3Q7Z407 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CSMD3Q7Z407 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC18.58■□□□□ 0.57
CSMD3Q7Z407 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CSMD3Q7Z407 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC18.58■□□□□ 0.56
CSMD3Q7Z407 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC18.57■□□□□ 0.56
CSMD3Q7Z407 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC18.57■□□□□ 0.56
CSMD3Q7Z407 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC18.56■□□□□ 0.56
CSMD3Q7Z407 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CSMD3Q7Z407 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CSMD3Q7Z407 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CSMD3Q7Z407 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CSMD3Q7Z407 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CSMD3Q7Z407 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC18.54■□□□□ 0.56
CSMD3Q7Z407 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CSMD3Q7Z407 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CSMD3Q7Z407 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CSMD3Q7Z407 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CSMD3Q7Z407 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CSMD3Q7Z407 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC18.52■□□□□ 0.56
CSMD3Q7Z407 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CSMD3Q7Z407 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CSMD3Q7Z407 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CSMD3Q7Z407 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC18.51■□□□□ 0.55
CSMD3Q7Z407 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CSMD3Q7Z407 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CSMD3Q7Z407 TPT1-202ENST00000379055 948 ntTSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms