Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB3O15347 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGB3O15347 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGB3O15347 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB3O15347 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.05■□□□□ 0.96
HMGB3O15347 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.05■□□□□ 0.96
HMGB3O15347 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
HMGB3O15347 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGB3O15347 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
HMGB3O15347 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB3O15347 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGB3O15347 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB3O15347 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB3O15347 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
HMGB3O15347 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
HMGB3O15347 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB3O15347 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB3O15347 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGB3O15347 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
HMGB3O15347 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
HMGB3O15347 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGB3O15347 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB3O15347 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGB3O15347 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB3O15347 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
HMGB3O15347 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB3O15347 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB3O15347 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB3O15347 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB3O15347 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB3O15347 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
HMGB3O15347 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB3O15347 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB3O15347 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB3O15347 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB3O15347 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB3O15347 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB3O15347 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB3O15347 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.96■□□□□ 0.95
HMGB3O15347 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB3O15347 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGB3O15347 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB3O15347 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB3O15347 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB3O15347 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGB3O15347 AC142086.6-201ENST00000621154 1765 ntBASIC20.95■□□□□ 0.94
HMGB3O15347 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB3O15347 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HMGB3O15347 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB3O15347 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB3O15347 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.93■□□□□ 0.94
HMGB3O15347 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB3O15347 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB3O15347 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB3O15347 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB3O15347 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB3O15347 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HMGB3O15347 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB3O15347 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB3O15347 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB3O15347 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB3O15347 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB3O15347 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB3O15347 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB3O15347 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB3O15347 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
HMGB3O15347 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
HMGB3O15347 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HMGB3O15347 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HMGB3O15347 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGB3O15347 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
HMGB3O15347 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
HMGB3O15347 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB3O15347 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB3O15347 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB3O15347 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB3O15347 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB3O15347 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB3O15347 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB3O15347 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB3O15347 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB3O15347 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB3O15347 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB3O15347 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB3O15347 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB3O15347 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGB3O15347 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB3O15347 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB3O15347 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HMGB3O15347 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
HMGB3O15347 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HMGB3O15347 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.82■□□□□ 0.92
HMGB3O15347 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB3O15347 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB3O15347 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.82■□□□□ 0.92
HMGB3O15347 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.81■□□□□ 0.92
HMGB3O15347 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB3O15347 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB3O15347 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB3O15347 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms