Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LINC01006Q8NI28 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC21.13■□□□□ 0.97
LINC01006Q8NI28 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LINC01006Q8NI28 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
LINC01006Q8NI28 MIR6090-201ENST00000622481 60 ntBASIC21.13■□□□□ 0.97
LINC01006Q8NI28 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.13■□□□□ 0.97
LINC01006Q8NI28 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LINC01006Q8NI28 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LINC01006Q8NI28 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LINC01006Q8NI28 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LINC01006Q8NI28 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.12■□□□□ 0.97
LINC01006Q8NI28 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LINC01006Q8NI28 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LINC01006Q8NI28 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LINC01006Q8NI28 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LINC01006Q8NI28 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LINC01006Q8NI28 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.1■□□□□ 0.97
LINC01006Q8NI28 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
LINC01006Q8NI28 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LINC01006Q8NI28 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC21.09■□□□□ 0.97
LINC01006Q8NI28 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.09■□□□□ 0.97
LINC01006Q8NI28 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LINC01006Q8NI28 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LINC01006Q8NI28 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC21.08■□□□□ 0.97
LINC01006Q8NI28 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.08■□□□□ 0.97
LINC01006Q8NI28 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LINC01006Q8NI28 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LINC01006Q8NI28 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.07■□□□□ 0.96
LINC01006Q8NI28 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.07■□□□□ 0.96
LINC01006Q8NI28 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LINC01006Q8NI28 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LINC01006Q8NI28 MIR639-201ENST00000384974 98 ntBASIC21.04■□□□□ 0.96
LINC01006Q8NI28 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LINC01006Q8NI28 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LINC01006Q8NI28 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.03■□□□□ 0.96
LINC01006Q8NI28 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LINC01006Q8NI28 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.03■□□□□ 0.96
LINC01006Q8NI28 MIR4449-201ENST00000578365 66 ntBASIC21.03■□□□□ 0.96
LINC01006Q8NI28 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LINC01006Q8NI28 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LINC01006Q8NI28 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LINC01006Q8NI28 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LINC01006Q8NI28 RNF166-209ENST00000567844 633 ntTSL 5 BASIC21.02■□□□□ 0.96
LINC01006Q8NI28 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
LINC01006Q8NI28 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.01■□□□□ 0.95
LINC01006Q8NI28 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LINC01006Q8NI28 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LINC01006Q8NI28 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LINC01006Q8NI28 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.99■□□□□ 0.95
LINC01006Q8NI28 MIR3648-2-201ENST00000581792 180 ntBASIC20.99■□□□□ 0.95
LINC01006Q8NI28 MIR3648-1-201ENST00000615959 180 ntBASIC20.99■□□□□ 0.95
LINC01006Q8NI28 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
LINC01006Q8NI28 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
LINC01006Q8NI28 AC016575.1-201ENST00000607026 382 ntBASIC20.98■□□□□ 0.95
LINC01006Q8NI28 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.98■□□□□ 0.95
LINC01006Q8NI28 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LINC01006Q8NI28 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LINC01006Q8NI28 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.97■□□□□ 0.95
LINC01006Q8NI28 LINC01971-201ENST00000617888 1048 ntBASIC20.97■□□□□ 0.95
LINC01006Q8NI28 DUX4L11-201ENST00000611504 1267 ntBASIC20.96■□□□□ 0.95
LINC01006Q8NI28 DUX4L12-201ENST00000614593 1267 ntBASIC20.96■□□□□ 0.95
LINC01006Q8NI28 DUX4L14-201ENST00000621227 1267 ntBASIC20.96■□□□□ 0.95
LINC01006Q8NI28 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
LINC01006Q8NI28 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LINC01006Q8NI28 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.95■□□□□ 0.94
LINC01006Q8NI28 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.95■□□□□ 0.94
LINC01006Q8NI28 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LINC01006Q8NI28 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.94■□□□□ 0.94
LINC01006Q8NI28 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.94■□□□□ 0.94
LINC01006Q8NI28 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LINC01006Q8NI28 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LINC01006Q8NI28 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC20.93■□□□□ 0.94
LINC01006Q8NI28 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
LINC01006Q8NI28 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
LINC01006Q8NI28 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LINC01006Q8NI28 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
LINC01006Q8NI28 AC120057.4-201ENST00000624722 1615 ntBASIC20.9■□□□□ 0.94
LINC01006Q8NI28 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LINC01006Q8NI28 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.9■□□□□ 0.94
LINC01006Q8NI28 CR559946.2-201ENST00000623684 991 ntBASIC20.9■□□□□ 0.94
LINC01006Q8NI28 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.89■□□□□ 0.93
LINC01006Q8NI28 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LINC01006Q8NI28 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.88■□□□□ 0.93
LINC01006Q8NI28 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LINC01006Q8NI28 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.88■□□□□ 0.93
LINC01006Q8NI28 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LINC01006Q8NI28 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LINC01006Q8NI28 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LINC01006Q8NI28 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LINC01006Q8NI28 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.86■□□□□ 0.93
LINC01006Q8NI28 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LINC01006Q8NI28 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LINC01006Q8NI28 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LINC01006Q8NI28 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LINC01006Q8NI28 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LINC01006Q8NI28 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
LINC01006Q8NI28 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
LINC01006Q8NI28 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC20.82■□□□□ 0.92
LINC01006Q8NI28 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.82■□□□□ 0.92
LINC01006Q8NI28 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms