Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MIR6090-201ENST00000622481 60 ntBASIC35.88■■■■□ 3.33
USHBP1Q8N6Y0 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
USHBP1Q8N6Y0 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC35.87■■■■□ 3.33
USHBP1Q8N6Y0 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
USHBP1Q8N6Y0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC35.86■■■■□ 3.33
USHBP1Q8N6Y0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
USHBP1Q8N6Y0 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
USHBP1Q8N6Y0 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC35.84■■■■□ 3.33
USHBP1Q8N6Y0 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
USHBP1Q8N6Y0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC35.84■■■■□ 3.33
USHBP1Q8N6Y0 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC35.84■■■■□ 3.33
USHBP1Q8N6Y0 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC35.84■■■■□ 3.33
USHBP1Q8N6Y0 CIB2-204ENST00000557846 934 ntTSL 3 BASIC35.82■■■■□ 3.32
USHBP1Q8N6Y0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
USHBP1Q8N6Y0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
USHBP1Q8N6Y0 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
USHBP1Q8N6Y0 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC35.81■■■■□ 3.32
USHBP1Q8N6Y0 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
USHBP1Q8N6Y0 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
USHBP1Q8N6Y0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC35.77■■■■□ 3.32
USHBP1Q8N6Y0 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC35.75■■■■□ 3.31
USHBP1Q8N6Y0 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
USHBP1Q8N6Y0 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
USHBP1Q8N6Y0 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
USHBP1Q8N6Y0 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC35.71■■■■□ 3.31
USHBP1Q8N6Y0 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
USHBP1Q8N6Y0 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
USHBP1Q8N6Y0 AC108673.1-201ENST00000510422 1159 ntBASIC35.7■■■■□ 3.31
USHBP1Q8N6Y0 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC35.7■■■■□ 3.31
USHBP1Q8N6Y0 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC35.7■■■■□ 3.31
USHBP1Q8N6Y0 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC35.69■■■■□ 3.3
USHBP1Q8N6Y0 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC35.69■■■■□ 3.3
USHBP1Q8N6Y0 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC35.68■■■■□ 3.3
USHBP1Q8N6Y0 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC35.64■■■■□ 3.3
USHBP1Q8N6Y0 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC35.64■■■■□ 3.3
USHBP1Q8N6Y0 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC35.64■■■■□ 3.3
USHBP1Q8N6Y0 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
USHBP1Q8N6Y0 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC35.63■■■■□ 3.29
USHBP1Q8N6Y0 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC35.63■■■■□ 3.29
USHBP1Q8N6Y0 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC35.63■■■■□ 3.29
USHBP1Q8N6Y0 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC35.63■■■■□ 3.29
USHBP1Q8N6Y0 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC35.63■■■■□ 3.29
USHBP1Q8N6Y0 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC35.63■■■■□ 3.29
USHBP1Q8N6Y0 AC120057.4-201ENST00000624722 1615 ntBASIC35.62■■■■□ 3.29
USHBP1Q8N6Y0 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC35.62■■■■□ 3.29
USHBP1Q8N6Y0 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC35.62■■■■□ 3.29
USHBP1Q8N6Y0 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC35.62■■■■□ 3.29
USHBP1Q8N6Y0 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
USHBP1Q8N6Y0 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
USHBP1Q8N6Y0 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC35.6■■■■□ 3.29
USHBP1Q8N6Y0 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC35.59■■■■□ 3.29
USHBP1Q8N6Y0 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
USHBP1Q8N6Y0 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC35.59■■■■□ 3.29
USHBP1Q8N6Y0 RNF166-209ENST00000567844 633 ntTSL 5 BASIC35.58■■■■□ 3.29
USHBP1Q8N6Y0 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC35.57■■■■□ 3.28
USHBP1Q8N6Y0 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
USHBP1Q8N6Y0 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC35.55■■■■□ 3.28
USHBP1Q8N6Y0 MACF1-219ENST00000484793 834 ntTSL 2 BASIC35.53■■■■□ 3.28
USHBP1Q8N6Y0 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
USHBP1Q8N6Y0 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC35.52■■■■□ 3.28
USHBP1Q8N6Y0 AC016575.1-201ENST00000607026 382 ntBASIC35.52■■■■□ 3.28
USHBP1Q8N6Y0 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC35.52■■■■□ 3.28
USHBP1Q8N6Y0 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
USHBP1Q8N6Y0 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC35.52■■■■□ 3.28
USHBP1Q8N6Y0 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
USHBP1Q8N6Y0 MIR639-201ENST00000384974 98 ntBASIC35.51■■■■□ 3.28
USHBP1Q8N6Y0 MIR4449-201ENST00000578365 66 ntBASIC35.51■■■■□ 3.28
USHBP1Q8N6Y0 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC35.51■■■■□ 3.28
USHBP1Q8N6Y0 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.27
USHBP1Q8N6Y0 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
USHBP1Q8N6Y0 MIR3648-2-201ENST00000581792 180 ntBASIC35.5■■■■□ 3.27
USHBP1Q8N6Y0 MIR3648-1-201ENST00000615959 180 ntBASIC35.5■■■■□ 3.27
USHBP1Q8N6Y0 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
USHBP1Q8N6Y0 GDI1-215ENST00000630693 786 ntTSL 4 BASIC35.49■■■■□ 3.27
USHBP1Q8N6Y0 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC35.48■■■■□ 3.27
USHBP1Q8N6Y0 DUX4L11-201ENST00000611504 1267 ntBASIC35.46■■■■□ 3.27
USHBP1Q8N6Y0 DUX4L12-201ENST00000614593 1267 ntBASIC35.46■■■■□ 3.27
USHBP1Q8N6Y0 DUX4L14-201ENST00000621227 1267 ntBASIC35.46■■■■□ 3.27
USHBP1Q8N6Y0 CR559946.2-201ENST00000623684 991 ntBASIC35.45■■■■□ 3.27
USHBP1Q8N6Y0 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC35.45■■■■□ 3.27
USHBP1Q8N6Y0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC35.43■■■■□ 3.26
USHBP1Q8N6Y0 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
USHBP1Q8N6Y0 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC35.41■■■■□ 3.26
USHBP1Q8N6Y0 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC35.41■■■■□ 3.26
USHBP1Q8N6Y0 LINC01971-201ENST00000617888 1048 ntBASIC35.41■■■■□ 3.26
USHBP1Q8N6Y0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
USHBP1Q8N6Y0 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC35.39■■■■□ 3.26
USHBP1Q8N6Y0 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC35.38■■■■□ 3.25
USHBP1Q8N6Y0 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC35.38■■■■□ 3.25
USHBP1Q8N6Y0 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC35.37■■■■□ 3.25
USHBP1Q8N6Y0 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC35.37■■■■□ 3.25
USHBP1Q8N6Y0 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC35.37■■■■□ 3.25
USHBP1Q8N6Y0 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
USHBP1Q8N6Y0 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC35.35■■■■□ 3.25
USHBP1Q8N6Y0 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC35.34■■■■□ 3.25
USHBP1Q8N6Y0 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC35.33■■■■□ 3.25
USHBP1Q8N6Y0 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC35.32■■■■□ 3.24
USHBP1Q8N6Y0 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC35.31■■■■□ 3.24
USHBP1Q8N6Y0 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
USHBP1Q8N6Y0 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC35.29■■■■□ 3.24
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms