Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC33.42■■■□□ 2.94
COL4A1P02462 RPS2-202ENST00000526522 924 ntTSL 2 BASIC33.4■■■□□ 2.94
COL4A1P02462 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
COL4A1P02462 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC33.39■■■□□ 2.94
COL4A1P02462 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
COL4A1P02462 AC120057.4-201ENST00000624722 1615 ntBASIC33.39■■■□□ 2.94
COL4A1P02462 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
COL4A1P02462 MIR6090-201ENST00000622481 60 ntBASIC33.38■■■□□ 2.93
COL4A1P02462 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
COL4A1P02462 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
COL4A1P02462 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC33.36■■■□□ 2.93
COL4A1P02462 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC33.35■■■□□ 2.93
COL4A1P02462 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
COL4A1P02462 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
COL4A1P02462 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
COL4A1P02462 AC021231.2-201ENST00000594613 730 ntBASIC33.34■■■□□ 2.93
COL4A1P02462 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
COL4A1P02462 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
COL4A1P02462 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
COL4A1P02462 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC33.3■■■□□ 2.92
COL4A1P02462 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC33.29■■■□□ 2.92
COL4A1P02462 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC33.29■■■□□ 2.92
COL4A1P02462 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC33.28■■■□□ 2.92
COL4A1P02462 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC33.28■■■□□ 2.92
COL4A1P02462 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
COL4A1P02462 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC33.27■■■□□ 2.92
COL4A1P02462 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
COL4A1P02462 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC33.26■■■□□ 2.91
COL4A1P02462 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC33.26■■■□□ 2.91
COL4A1P02462 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC33.26■■■□□ 2.91
COL4A1P02462 DUX4L29-201ENST00000425409 679 ntBASIC33.26■■■□□ 2.91
COL4A1P02462 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC33.24■■■□□ 2.91
COL4A1P02462 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC33.24■■■□□ 2.91
COL4A1P02462 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC33.24■■■□□ 2.91
COL4A1P02462 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
COL4A1P02462 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
COL4A1P02462 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
COL4A1P02462 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
COL4A1P02462 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC33.21■■■□□ 2.91
COL4A1P02462 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
COL4A1P02462 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC33.2■■■□□ 2.91
COL4A1P02462 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
COL4A1P02462 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC33.19■■■□□ 2.9
COL4A1P02462 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC33.17■■■□□ 2.9
COL4A1P02462 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC33.17■■■□□ 2.9
COL4A1P02462 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC33.17■■■□□ 2.9
COL4A1P02462 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC33.17■■■□□ 2.9
COL4A1P02462 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
COL4A1P02462 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC33.16■■■□□ 2.9
COL4A1P02462 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL4A1P02462 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
COL4A1P02462 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
COL4A1P02462 AC108673.1-201ENST00000510422 1159 ntBASIC33.13■■■□□ 2.89
COL4A1P02462 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC33.12■■■□□ 2.89
COL4A1P02462 CIB2-204ENST00000557846 934 ntTSL 3 BASIC33.12■■■□□ 2.89
COL4A1P02462 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
COL4A1P02462 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
COL4A1P02462 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC33.1■■■□□ 2.89
COL4A1P02462 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC33.09■■■□□ 2.89
COL4A1P02462 CR559946.2-201ENST00000623684 991 ntBASIC33.08■■■□□ 2.89
COL4A1P02462 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC33.07■■■□□ 2.88
COL4A1P02462 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC33.07■■■□□ 2.88
COL4A1P02462 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
COL4A1P02462 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
COL4A1P02462 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
COL4A1P02462 MACF1-219ENST00000484793 834 ntTSL 2 BASIC33.06■■■□□ 2.88
COL4A1P02462 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC33.06■■■□□ 2.88
COL4A1P02462 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL4A1P02462 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.88
COL4A1P02462 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL4A1P02462 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC33.04■■■□□ 2.88
COL4A1P02462 RNF166-209ENST00000567844 633 ntTSL 5 BASIC33.04■■■□□ 2.88
COL4A1P02462 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
COL4A1P02462 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC33.03■■■□□ 2.88
COL4A1P02462 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC33.03■■■□□ 2.88
COL4A1P02462 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
COL4A1P02462 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
COL4A1P02462 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC33.01■■■□□ 2.87
COL4A1P02462 AC016575.1-201ENST00000607026 382 ntBASIC33.01■■■□□ 2.87
COL4A1P02462 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
COL4A1P02462 MIR4449-201ENST00000578365 66 ntBASIC33■■■□□ 2.87
COL4A1P02462 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC32.99■■■□□ 2.87
COL4A1P02462 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC32.99■■■□□ 2.87
COL4A1P02462 GDI1-215ENST00000630693 786 ntTSL 4 BASIC32.99■■■□□ 2.87
COL4A1P02462 MIR3648-2-201ENST00000581792 180 ntBASIC32.97■■■□□ 2.87
COL4A1P02462 MIR3648-1-201ENST00000615959 180 ntBASIC32.97■■■□□ 2.87
COL4A1P02462 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
COL4A1P02462 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
COL4A1P02462 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC32.95■■■□□ 2.87
COL4A1P02462 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
COL4A1P02462 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC32.93■■■□□ 2.86
COL4A1P02462 MIR639-201ENST00000384974 98 ntBASIC32.93■■■□□ 2.86
COL4A1P02462 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
COL4A1P02462 DUX4L11-201ENST00000611504 1267 ntBASIC32.92■■■□□ 2.86
COL4A1P02462 DUX4L12-201ENST00000614593 1267 ntBASIC32.92■■■□□ 2.86
COL4A1P02462 DUX4L14-201ENST00000621227 1267 ntBASIC32.92■■■□□ 2.86
COL4A1P02462 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
COL4A1P02462 AL161658.1-201ENST00000623641 1967 ntBASIC32.89■■■□□ 2.86
COL4A1P02462 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC32.89■■■□□ 2.86
COL4A1P02462 LINC01971-201ENST00000617888 1048 ntBASIC32.89■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms