Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.5■□□□□ 0.55
MMP28Q9H239 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.5■□□□□ 0.55
MMP28Q9H239 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.5■□□□□ 0.55
MMP28Q9H239 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MMP28Q9H239 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.5■□□□□ 0.55
MMP28Q9H239 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
MMP28Q9H239 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
MMP28Q9H239 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.49■□□□□ 0.55
MMP28Q9H239 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.49■□□□□ 0.55
MMP28Q9H239 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.49■□□□□ 0.55
MMP28Q9H239 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
MMP28Q9H239 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.49■□□□□ 0.55
MMP28Q9H239 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.49■□□□□ 0.55
MMP28Q9H239 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
MMP28Q9H239 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.49■□□□□ 0.55
MMP28Q9H239 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
MMP28Q9H239 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.49■□□□□ 0.55
MMP28Q9H239 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MMP28Q9H239 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
MMP28Q9H239 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
MMP28Q9H239 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.48■□□□□ 0.55
MMP28Q9H239 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.48■□□□□ 0.55
MMP28Q9H239 UNC93B8-201ENST00000511903 705 ntBASIC18.48■□□□□ 0.55
MMP28Q9H239 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.48■□□□□ 0.55
MMP28Q9H239 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.48■□□□□ 0.55
MMP28Q9H239 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
MMP28Q9H239 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.48■□□□□ 0.55
MMP28Q9H239 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MMP28Q9H239 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
MMP28Q9H239 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
MMP28Q9H239 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 AC008406.3-201ENST00000620001 1374 ntBASIC18.47■□□□□ 0.55
MMP28Q9H239 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.47■□□□□ 0.55
MMP28Q9H239 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC18.47■□□□□ 0.55
MMP28Q9H239 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.47■□□□□ 0.55
MMP28Q9H239 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
MMP28Q9H239 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
MMP28Q9H239 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.47■□□□□ 0.55
MMP28Q9H239 LINC01960-201ENST00000563759 1884 ntBASIC18.47■□□□□ 0.55
MMP28Q9H239 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.47■□□□□ 0.55
MMP28Q9H239 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.47■□□□□ 0.55
MMP28Q9H239 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.47■□□□□ 0.55
MMP28Q9H239 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MMP28Q9H239 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MMP28Q9H239 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MMP28Q9H239 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MMP28Q9H239 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
MMP28Q9H239 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MMP28Q9H239 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MMP28Q9H239 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.46■□□□□ 0.55
MMP28Q9H239 KRT16P3-201ENST00000439127 1283 ntBASIC18.46■□□□□ 0.55
MMP28Q9H239 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.46■□□□□ 0.55
MMP28Q9H239 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
MMP28Q9H239 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MMP28Q9H239 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
MMP28Q9H239 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MMP28Q9H239 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.46■□□□□ 0.55
MMP28Q9H239 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MMP28Q9H239 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MMP28Q9H239 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.46■□□□□ 0.54
MMP28Q9H239 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms