RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 NISCHQ9Y2I1 1504 aa42.82■■■■■ 4.45
VPS53-201ENST00000291074 CCDC180Q9P1Z9 1646 aa36.66■■■■□ 3.46
VPS53-201ENST00000291074 SHROOM4Q9ULL8 1493 aa36.18■■■■□ 3.38
VPS53-201ENST00000291074 ZCCHC6Q5VYS8 1495 aaKnown RBP36.17■■■■□ 3.38
VPS53-201ENST00000291074 DCAF8L2P0C7V8 631 aa35.5■■■■□ 3.27
VPS53-201ENST00000291074 SUPT5HO00267 1087 aaKnown RBP35.26■■■■□ 3.24
VPS53-201ENST00000291074 DCAF1Q9Y4B6 1507 aa35.14■■■■□ 3.22
VPS53-201ENST00000291074 MYO15BQ96JP2 1530 aa34.36■■■■□ 3.09
VPS53-201ENST00000291074 SCRIBQ14160 1630 aa34.27■■■■□ 3.08
VPS53-201ENST00000291074 ABCC9O60706 1549 aa34.21■■■■□ 3.07
VPS53-201ENST00000291074 CHIC1Q5VXU3 224 aa34.11■■■■□ 3.05
VPS53-201ENST00000291074 NACADO15069 1562 aa33.93■■■■□ 3.02
VPS53-201ENST00000291074 RSF1Q96T23 1441 aaPredicted RBP33.72■■■□□ 2.99
VPS53-201ENST00000291074 RB1CC1Q8TDY2 1594 aa33.46■■■□□ 2.95
VPS53-201ENST00000291074 CECR2Q9BXF3 1484 aa33.42■■■□□ 2.94
VPS53-201ENST00000291074 MROH2BQ7Z745 1585 aa33.28■■■□□ 2.92
VPS53-201ENST00000291074 WIZO95785 1651 aa33.12■■■□□ 2.89
VPS53-201ENST00000291074 LOC105371045A0A1W2PR82 267 aa33.07■■■□□ 2.89
VPS53-201ENST00000291074 UNC13AQ9UPW8 1703 aa33.06■■■□□ 2.88
VPS53-201ENST00000291074 BAZ1AQ9NRL2 1556 aaPredicted RBP32.92■■■□□ 2.86
VPS53-201ENST00000291074 TRIM41Q8WV44 630 aa32.87■■■□□ 2.85
VPS53-201ENST00000291074 SMARCA4P51532 1647 aa32.73■■■□□ 2.83
VPS53-201ENST00000291074 PCGF6Q9BYE7 350 aa32.64■■■□□ 2.81
VPS53-201ENST00000291074 BICRAQ9NZM4 1560 aa32.6■■■□□ 2.81
VPS53-201ENST00000291074 FAM9AQ8IZU1 332 aaPredicted RBP32.6■■■□□ 2.81
VPS53-201ENST00000291074 PABPN1Q86U42 306 aaKnown RBP eCLIP32.59■■■□□ 2.81
VPS53-201ENST00000291074 TOP2AP11388 1531 aaKnown RBP32.57■■■□□ 2.8
VPS53-201ENST00000291074 EIF4G1Q04637 1599 aaKnown RBP32.53■■■□□ 2.8
VPS53-201ENST00000291074 SMARCA2P51531 1590 aa32.4■■■□□ 2.78
VPS53-201ENST00000291074 CCDC88BA6NC98 1476 aa32.39■■■□□ 2.78
VPS53-201ENST00000291074 HRCP23327 699 aa32.37■■■□□ 2.77
VPS53-201ENST00000291074 EHMT2Q96KQ7 1210 aa32.33■■■□□ 2.77
VPS53-201ENST00000291074 ABCC8Q09428 1581 aa32.23■■■□□ 2.75
VPS53-201ENST00000291074 PEG3Q9GZU2 1588 aa32.11■■■□□ 2.73
VPS53-201ENST00000291074 TRIM26Q12899 539 aaPredicted RBP32.1■■■□□ 2.73
VPS53-201ENST00000291074 ATAD2BQ9ULI0 1458 aa31.93■■■□□ 2.7
VPS53-201ENST00000291074 BAZ1BQ9UIG0 1483 aaKnown RBP31.84■■■□□ 2.69
VPS53-201ENST00000291074 PPARGC1BQ86YN6 1023 aaKnown RBP31.8■■■□□ 2.68
VPS53-201ENST00000291074 SOGA1O94964 1423 aa31.8■■■□□ 2.68
VPS53-201ENST00000291074 RUSC2Q8N2Y8 1516 aa31.68■■■□□ 2.66
VPS53-201ENST00000291074 WRNQ14191 1432 aaPredicted RBP eCLIP31.68■■■□□ 2.66
VPS53-201ENST00000291074 SYNJ1O43426 1573 aa31.6■■■□□ 2.65
VPS53-201ENST00000291074 EEA1Q15075 1411 aa31.55■■■□□ 2.64
VPS53-201ENST00000291074 CSRNP3Q8WYN3 585 aa31.53■■■□□ 2.64
VPS53-201ENST00000291074 CEP162Q5TB80 1403 aa31.47■■■□□ 2.63
VPS53-201ENST00000291074 TNIKQ9UKE5 1360 aa31.42■■■□□ 2.62
VPS53-201ENST00000291074 HMGXB3Q12766 1538 aa31.38■■■□□ 2.61
VPS53-201ENST00000291074 NCAPD3P42695 1498 aa31.37■■■□□ 2.61
VPS53-201ENST00000291074 UBTFP17480 764 aaKnown RBP31.36■■■□□ 2.61
VPS53-201ENST00000291074 GOLGA3Q08378 1498 aa31.35■■■□□ 2.61
VPS53-201ENST00000291074 TOP2BQ02880 1626 aa31.23■■■□□ 2.59
VPS53-201ENST00000291074 KIF21BO75037 1637 aa31.21■■■□□ 2.59
VPS53-201ENST00000291074 CEP164Q9UPV0 1460 aa31.2■■■□□ 2.59
VPS53-201ENST00000291074 TTBK1Q5TCY1 1321 aaPredicted RBP31.2■■■□□ 2.58
VPS53-201ENST00000291074 ZEB1P37275 1124 aaPredicted RBP31.18■■■□□ 2.58
VPS53-201ENST00000291074 BIVM-ERCC5R4GMW8 1640 aa31.16■■■□□ 2.58
VPS53-201ENST00000291074 RAPGEF2Q9Y4G8 1499 aa31.05■■■□□ 2.56
VPS53-201ENST00000291074 CFTRP13569 1480 aa31.02■■■□□ 2.56
VPS53-201ENST00000291074 CUX1P39880 1505 aa31.02■■■□□ 2.56
VPS53-201ENST00000291074 CLIP1P30622 1438 aa30.96■■■□□ 2.55
VPS53-201ENST00000291074 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.93■■■□□ 2.54
VPS53-201ENST00000291074 PRDM2Q13029 1718 aa30.87■■■□□ 2.53
VPS53-201ENST00000291074 RANGAP1P46060 587 aaPredicted RBP30.86■■■□□ 2.53
VPS53-201ENST00000291074 CC2D2AQ9P2K1 1620 aa30.84■■■□□ 2.53
VPS53-201ENST00000291074 CCER1Q8TC90 406 aaPredicted RBP30.8■■■□□ 2.52
VPS53-201ENST00000291074 PRXQ9BXM0 1461 aa30.79■■■□□ 2.52
VPS53-201ENST00000291074 VPS8Q8N3P4 1428 aa30.78■■■□□ 2.52
VPS53-201ENST00000291074 ERICH3Q5RHP9 1530 aa30.76■■■□□ 2.51
VPS53-201ENST00000291074 KIF27Q86VH2 1401 aa30.73■■■□□ 2.51
VPS53-201ENST00000291074 CADPSQ9ULU8 1353 aa30.72■■■□□ 2.51
VPS53-201ENST00000291074 APLP2Q06481 763 aa30.55■■■□□ 2.48
VPS53-201ENST00000291074 ARAP1Q96P48 1450 aa30.55■■■□□ 2.48
VPS53-201ENST00000291074 CUX2O14529 1486 aa30.54■■■□□ 2.48
VPS53-201ENST00000291074 FGD5Q6ZNL6 1462 aa30.52■■■□□ 2.48
VPS53-201ENST00000291074 FANCD2Q9BXW9 1451 aa30.46■■■□□ 2.47
VPS53-201ENST00000291074 HNRNPUL2Q1KMD3 747 aaKnown RBP30.45■■■□□ 2.46
VPS53-201ENST00000291074 IGF1RP08069 1367 aa30.41■■■□□ 2.46
VPS53-201ENST00000291074 NESP48681 1621 aa30.39■■■□□ 2.46
VPS53-201ENST00000291074 ARHGAP35Q9NRY4 1499 aa30.34■■■□□ 2.45
VPS53-201ENST00000291074 DNMBPQ6XZF7 1577 aa30.29■■■□□ 2.44
VPS53-201ENST00000291074 KANK4Q5T7N3 995 aaPredicted RBP30.28■■■□□ 2.44
VPS53-201ENST00000291074 CARMIL1Q5VZK9 1371 aa30.28■■■□□ 2.44
VPS53-201ENST00000291074 RAD54L2Q9Y4B4 1467 aa30.24■■■□□ 2.43
VPS53-201ENST00000291074 TOPBP1Q92547 1522 aa30.24■■■□□ 2.43
VPS53-201ENST00000291074 POLA1P09884 1462 aaPredicted RBP30.2■■■□□ 2.43
VPS53-201ENST00000291074 ABCA10Q8WWZ4 1543 aa30.13■■■□□ 2.41
VPS53-201ENST00000291074 LAMC3Q9Y6N6 1575 aa30.12■■■□□ 2.41
VPS53-201ENST00000291074 DNAJC5BQ9UF47 199 aa30.12■■■□□ 2.41
VPS53-201ENST00000291074 URB2Q14146 1524 aaKnown RBP30.06■■■□□ 2.4
VPS53-201ENST00000291074 RRBP1Q9P2E9 1410 aaKnown RBP30■■■□□ 2.39
VPS53-201ENST00000291074 WDR97A6NE52 1622 aa29.97■■■□□ 2.39
VPS53-201ENST00000291074 TIAM1Q13009 1591 aa29.96■■■□□ 2.39
VPS53-201ENST00000291074 DIEXFQ68CQ4 756 aaKnown RBP29.96■■■□□ 2.39
VPS53-201ENST00000291074 P3H3Q8IVL6 736 aa29.95■■■□□ 2.39
VPS53-201ENST00000291074 CUL7Q14999 1698 aa29.95■■■□□ 2.38
VPS53-201ENST00000291074 KIF21AQ7Z4S6 1674 aa29.92■■■□□ 2.38
VPS53-201ENST00000291074 PDS5BQ9NTI5 1447 aa29.89■■■□□ 2.38
VPS53-201ENST00000291074 CCNB3Q8WWL7 1395 aa29.89■■■□□ 2.38
VPS53-201ENST00000291074 PCF11O94913 1555 aaKnown RBP29.88■■■□□ 2.37
VPS53-201ENST00000291074 CTTNBP2Q8WZ74 1663 aa29.87■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms