RNA–Protein interactions for RNA: ENST00000392334.6

CSNK1D-203, Transcript of casein kinase 1 delta, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CSNK1D, Length 2,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-203ENST00000392334 NISCHQ9Y2I1 1504 aa44.49■■■■■ 4.71
CSNK1D-203ENST00000392334 CCDC180Q9P1Z9 1646 aa38.96■■■■□ 3.83
CSNK1D-203ENST00000392334 ABCC9O60706 1549 aa37.42■■■■□ 3.58
CSNK1D-203ENST00000392334 ZCCHC6Q5VYS8 1495 aaKnown RBP37.26■■■■□ 3.56
CSNK1D-203ENST00000392334 DCAF8L2P0C7V8 631 aa37.05■■■■□ 3.52
CSNK1D-203ENST00000392334 DCAF1Q9Y4B6 1507 aa36.7■■■■□ 3.46
CSNK1D-203ENST00000392334 MYO15BQ96JP2 1530 aa36.43■■■■□ 3.42
CSNK1D-203ENST00000392334 NACADO15069 1562 aa36.41■■■■□ 3.42
CSNK1D-203ENST00000392334 SHROOM4Q9ULL8 1493 aa36.36■■■■□ 3.41
CSNK1D-203ENST00000392334 RB1CC1Q8TDY2 1594 aa36.23■■■■□ 3.39
CSNK1D-203ENST00000392334 SCRIBQ14160 1630 aa35.88■■■■□ 3.33
CSNK1D-203ENST00000392334 UNC13AQ9UPW8 1703 aa35.58■■■■□ 3.29
CSNK1D-203ENST00000392334 PABPN1Q86U42 306 aaKnown RBP eCLIP35.23■■■■□ 3.233e-7■■■□□ 17.8
CSNK1D-203ENST00000392334 BICRAQ9NZM4 1560 aa35.21■■■■□ 3.23
CSNK1D-203ENST00000392334 SUPT5HO00267 1087 aaKnown RBP34.98■■■■□ 3.19
CSNK1D-203ENST00000392334 CECR2Q9BXF3 1484 aa34.69■■■■□ 3.14
CSNK1D-203ENST00000392334 MROH2BQ7Z745 1585 aa34.4■■■■□ 3.1
CSNK1D-203ENST00000392334 BAZ1AQ9NRL2 1556 aaPredicted RBP34.37■■■■□ 3.09
CSNK1D-203ENST00000392334 RSF1Q96T23 1441 aaPredicted RBP34.36■■■■□ 3.09
CSNK1D-203ENST00000392334 SMARCA4P51532 1647 aa34.31■■■■□ 3.08
CSNK1D-203ENST00000392334 EIF4G1Q04637 1599 aaKnown RBP34.18■■■■□ 3.06
CSNK1D-203ENST00000392334 WIZO95785 1651 aa34.12■■■■□ 3.05
CSNK1D-203ENST00000392334 ATAD2BQ9ULI0 1458 aa33.87■■■■□ 3.01
CSNK1D-203ENST00000392334 PEG3Q9GZU2 1588 aa33.86■■■■□ 3.01
CSNK1D-203ENST00000392334 CC2D2AQ9P2K1 1620 aa33.82■■■■□ 3
CSNK1D-203ENST00000392334 SMARCA2P51531 1590 aa33.79■■■■□ 3
CSNK1D-203ENST00000392334 TOP2AP11388 1531 aaKnown RBP33.66■■■□□ 2.98
CSNK1D-203ENST00000392334 BAZ1BQ9UIG0 1483 aaKnown RBP33.65■■■□□ 2.98
CSNK1D-203ENST00000392334 NCAPD3P42695 1498 aa33.63■■■□□ 2.97
CSNK1D-203ENST00000392334 HMGXB3Q12766 1538 aa33.52■■■□□ 2.96
CSNK1D-203ENST00000392334 DNAJC5BQ9UF47 199 aa33.51■■■□□ 2.95
CSNK1D-203ENST00000392334 CCDC88BA6NC98 1476 aa33.36■■■□□ 2.93
CSNK1D-203ENST00000392334 CHIC1Q5VXU3 224 aa33.33■■■□□ 2.93
CSNK1D-203ENST00000392334 CFTRP13569 1480 aa32.77■■■□□ 2.84
CSNK1D-203ENST00000392334 TRIM41Q8WV44 630 aa32.76■■■□□ 2.83
CSNK1D-203ENST00000392334 CADPSQ9ULU8 1353 aa32.76■■■□□ 2.83
CSNK1D-203ENST00000392334 NESP48681 1621 aa32.72■■■□□ 2.83
CSNK1D-203ENST00000392334 ABCC8Q09428 1581 aa32.56■■■□□ 2.8
CSNK1D-203ENST00000392334 LAMC3Q9Y6N6 1575 aa32.56■■■□□ 2.8
CSNK1D-203ENST00000392334 PRDM2Q13029 1718 aa32.55■■■□□ 2.8
CSNK1D-203ENST00000392334 FANCD2Q9BXW9 1451 aa32.41■■■□□ 2.78
CSNK1D-203ENST00000392334 FAM9AQ8IZU1 332 aaPredicted RBP32.36■■■□□ 2.77
CSNK1D-203ENST00000392334 WRNQ14191 1432 aaPredicted RBP eCLIP32.34■■■□□ 2.775e-6■■■■■ 38.2
CSNK1D-203ENST00000392334 PDS5BQ9NTI5 1447 aa32.33■■■□□ 2.77
CSNK1D-203ENST00000392334 HRCP23327 699 aa32.29■■■□□ 2.76
CSNK1D-203ENST00000392334 KIF21AQ7Z4S6 1674 aa32.29■■■□□ 2.76
CSNK1D-203ENST00000392334 SYNJ1O43426 1573 aa32.26■■■□□ 2.75
CSNK1D-203ENST00000392334 CEP164Q9UPV0 1460 aa32.24■■■□□ 2.75
CSNK1D-203ENST00000392334 LOC105371045A0A1W2PR82 267 aa32.23■■■□□ 2.75
CSNK1D-203ENST00000392334 CUX1P39880 1505 aa32.18■■■□□ 2.74
CSNK1D-203ENST00000392334 TOP2BQ02880 1626 aa32.12■■■□□ 2.73
CSNK1D-203ENST00000392334 ERCC6Q03468 1493 aa32.08■■■□□ 2.73
CSNK1D-203ENST00000392334 BIVM-ERCC5R4GMW8 1640 aa32.08■■■□□ 2.73
CSNK1D-203ENST00000392334 EHMT2Q96KQ7 1210 aa32.07■■■□□ 2.72
CSNK1D-203ENST00000392334 URB2Q14146 1524 aaKnown RBP32.05■■■□□ 2.72
CSNK1D-203ENST00000392334 TOPBP1Q92547 1522 aa32.01■■■□□ 2.71
CSNK1D-203ENST00000392334 DNMBPQ6XZF7 1577 aa31.99■■■□□ 2.71
CSNK1D-203ENST00000392334 SOGA1O94964 1423 aa31.98■■■□□ 2.71
CSNK1D-203ENST00000392334 MRC2Q9UBG0 1479 aa31.94■■■□□ 2.7
CSNK1D-203ENST00000392334 PCGF6Q9BYE7 350 aa31.92■■■□□ 2.7
CSNK1D-203ENST00000392334 FGD5Q6ZNL6 1462 aa31.9■■■□□ 2.7
CSNK1D-203ENST00000392334 RUSC2Q8N2Y8 1516 aa31.88■■■□□ 2.69
CSNK1D-203ENST00000392334 THOC2Q8NI27 1593 aaKnown RBP31.84■■■□□ 2.69
CSNK1D-203ENST00000392334 POLA1P09884 1462 aaPredicted RBP31.83■■■□□ 2.69
CSNK1D-203ENST00000392334 WDR62O43379 1518 aa31.8■■■□□ 2.68
CSNK1D-203ENST00000392334 RAD54L2Q9Y4B4 1467 aa31.76■■■□□ 2.67
CSNK1D-203ENST00000392334 CSRNP3Q8WYN3 585 aa31.7■■■□□ 2.66
CSNK1D-203ENST00000392334 CUX2O14529 1486 aa31.64■■■□□ 2.66
CSNK1D-203ENST00000392334 EEA1Q15075 1411 aa31.63■■■□□ 2.65
CSNK1D-203ENST00000392334 ABCA10Q8WWZ4 1543 aa31.57■■■□□ 2.64
CSNK1D-203ENST00000392334 TARBP1Q13395 1621 aaKnown RBP31.57■■■□□ 2.64
CSNK1D-203ENST00000392334 KIF27Q86VH2 1401 aa31.54■■■□□ 2.64
CSNK1D-203ENST00000392334 WDR97A6NE52 1622 aa31.53■■■□□ 2.64
CSNK1D-203ENST00000392334 TDRD9Q8NDG6 1382 aaKnown RBP31.5■■■□□ 2.63
CSNK1D-203ENST00000392334 TRIM26Q12899 539 aaPredicted RBP31.48■■■□□ 2.63
CSNK1D-203ENST00000392334 IFT140Q96RY7 1462 aa31.46■■■□□ 2.63
CSNK1D-203ENST00000392334 ZNF608Q9ULD9 1512 aaPredicted RBP31.42■■■□□ 2.62
CSNK1D-203ENST00000392334 UBTFP17480 764 aaKnown RBP31.41■■■□□ 2.62
CSNK1D-203ENST00000392334 AQRO60306 1485 aaKnown RBP eCLIP31.38■■■□□ 2.611e-7■■■■■ 36.9
CSNK1D-203ENST00000392334 ABCA5Q8WWZ7 1642 aa31.37■■■□□ 2.61
CSNK1D-203ENST00000392334 IGF1RP08069 1367 aa31.35■■■□□ 2.61
CSNK1D-203ENST00000392334 GAPVD1Q14C86 1478 aa31.34■■■□□ 2.61
CSNK1D-203ENST00000392334 PPARGC1BQ86YN6 1023 aaKnown RBP31.32■■■□□ 2.61
CSNK1D-203ENST00000392334 GOLGA3Q08378 1498 aa31.31■■■□□ 2.6
CSNK1D-203ENST00000392334 RAPGEF2Q9Y4G8 1499 aa31.27■■■□□ 2.6
CSNK1D-203ENST00000392334 EIF4G3O43432 1585 aaKnown RBP31.25■■■□□ 2.59
CSNK1D-203ENST00000392334 KIF21BO75037 1637 aa31.24■■■□□ 2.59
CSNK1D-203ENST00000392334 TNIKQ9UKE5 1360 aa31.22■■■□□ 2.59
CSNK1D-203ENST00000392334 PRXQ9BXM0 1461 aa31.21■■■□□ 2.59
CSNK1D-203ENST00000392334 PBRM1Q86U86 1689 aa31.21■■■□□ 2.59
CSNK1D-203ENST00000392334 ERICH3Q5RHP9 1530 aa31.18■■■□□ 2.58
CSNK1D-203ENST00000392334 CARMIL1Q5VZK9 1371 aa31.17■■■□□ 2.58
CSNK1D-203ENST00000392334 GRIN2BQ13224 1484 aa31.15■■■□□ 2.58
CSNK1D-203ENST00000392334 CEP162Q5TB80 1403 aa31.13■■■□□ 2.57
CSNK1D-203ENST00000392334 RANGAP1P46060 587 aaPredicted RBP31.13■■■□□ 2.57
CSNK1D-203ENST00000392334 CUL7Q14999 1698 aa31.09■■■□□ 2.57
CSNK1D-203ENST00000392334 SNAPC4Q5SXM2 1469 aa31.04■■■□□ 2.56
CSNK1D-203ENST00000392334 ZEB1P37275 1124 aaPredicted RBP31.01■■■□□ 2.55
CSNK1D-203ENST00000392334 ADAMTS12P58397 1594 aa30.98■■■□□ 2.55
CSNK1D-203ENST00000392334 FHAD1B1AJZ9 1412 aa30.97■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms