RNA–Protein interactions for RNA: ENST00000530785.5

LTBP3-217, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 2 BASIC

Gene LTBP3, Length 2,461 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-217ENST00000530785 NISCHQ9Y2I1 1504 aa40.25■■■■■ 4.03
LTBP3-217ENST00000530785 CCDC180Q9P1Z9 1646 aa34.56■■■■□ 3.12
LTBP3-217ENST00000530785 ZCCHC6Q5VYS8 1495 aaKnown RBP34■■■■□ 3.03
LTBP3-217ENST00000530785 SHROOM4Q9ULL8 1493 aa33.78■■■■□ 3
LTBP3-217ENST00000530785 DCAF8L2P0C7V8 631 aa33.19■■■□□ 2.9
LTBP3-217ENST00000530785 DCAF1Q9Y4B6 1507 aa33.13■■■□□ 2.89
LTBP3-217ENST00000530785 ABCC9O60706 1549 aa33.12■■■□□ 2.89
LTBP3-217ENST00000530785 SUPT5HO00267 1087 aaKnown RBP32.9■■■□□ 2.86
LTBP3-217ENST00000530785 MYO15BQ96JP2 1530 aa32.35■■■□□ 2.77
LTBP3-217ENST00000530785 NACADO15069 1562 aa32.22■■■□□ 2.75
LTBP3-217ENST00000530785 SCRIBQ14160 1630 aa32.16■■■□□ 2.74
LTBP3-217ENST00000530785 HRCP23327 699 aa32.1■■■□□ 2.73
LTBP3-217ENST00000530785 RB1CC1Q8TDY2 1594 aa32.04■■■□□ 2.72
LTBP3-217ENST00000530785 CHIC1Q5VXU3 224 aa31.87■■■□□ 2.69
LTBP3-217ENST00000530785 RSF1Q96T23 1441 aaPredicted RBP31.64■■■□□ 2.66
LTBP3-217ENST00000530785 UNC13AQ9UPW8 1703 aa31.49■■■□□ 2.63
LTBP3-217ENST00000530785 CECR2Q9BXF3 1484 aa31.35■■■□□ 2.61
LTBP3-217ENST00000530785 PABPN1Q86U42 306 aaKnown RBP eCLIP31.26■■■□□ 2.591e-7■■■□□ 15.3
LTBP3-217ENST00000530785 MROH2BQ7Z745 1585 aa31.24■■■□□ 2.59
LTBP3-217ENST00000530785 PELP1Q8IZL8 1130 aaKnown RBP31.22■■■□□ 2.59
LTBP3-217ENST00000530785 PPARGC1BQ86YN6 1023 aaKnown RBP31.21■■■□□ 2.59
LTBP3-217ENST00000530785 PCGF6Q9BYE7 350 aa31.2■■■□□ 2.58
LTBP3-217ENST00000530785 BICRAQ9NZM4 1560 aa31.17■■■□□ 2.58
LTBP3-217ENST00000530785 WIZO95785 1651 aa31.06■■■□□ 2.56
LTBP3-217ENST00000530785 BAZ1AQ9NRL2 1556 aaPredicted RBP30.98■■■□□ 2.55
LTBP3-217ENST00000530785 LOC105371045A0A1W2PR82 267 aa30.81■■■□□ 2.52
LTBP3-217ENST00000530785 SMARCA4P51532 1647 aa30.78■■■□□ 2.52
LTBP3-217ENST00000530785 TRIM41Q8WV44 630 aa30.74■■■□□ 2.51
LTBP3-217ENST00000530785 TOP2AP11388 1531 aaKnown RBP30.63■■■□□ 2.49
LTBP3-217ENST00000530785 EIF4G1Q04637 1599 aaKnown RBP30.56■■■□□ 2.48
LTBP3-217ENST00000530785 SMARCA2P51531 1590 aa30.43■■■□□ 2.46
LTBP3-217ENST00000530785 CCDC88BA6NC98 1476 aa30.4■■■□□ 2.46
LTBP3-217ENST00000530785 FAM9AQ8IZU1 332 aaPredicted RBP30.38■■■□□ 2.45
LTBP3-217ENST00000530785 SCAF1Q9H7N4 1312 aaKnown RBP30.35■■■□□ 2.45
LTBP3-217ENST00000530785 TRIM26Q12899 539 aaPredicted RBP30.34■■■□□ 2.45
LTBP3-217ENST00000530785 PEG3Q9GZU2 1588 aa30.26■■■□□ 2.44
LTBP3-217ENST00000530785 ZEB1P37275 1124 aaPredicted RBP30.21■■■□□ 2.43
LTBP3-217ENST00000530785 ABCC8Q09428 1581 aa30.17■■■□□ 2.42
LTBP3-217ENST00000530785 MYT1Q01538 1121 aa30.08■■■□□ 2.41
LTBP3-217ENST00000530785 EHMT2Q96KQ7 1210 aa30.06■■■□□ 2.4
LTBP3-217ENST00000530785 ATAD2BQ9ULI0 1458 aa30.04■■■□□ 2.4
LTBP3-217ENST00000530785 BAZ1BQ9UIG0 1483 aaKnown RBP29.93■■■□□ 2.38
LTBP3-217ENST00000530785 CC2D2AQ9P2K1 1620 aa29.9■■■□□ 2.38
LTBP3-217ENST00000530785 NCAPD3P42695 1498 aa29.8■■■□□ 2.36
LTBP3-217ENST00000530785 SOGA1O94964 1423 aa29.77■■■□□ 2.36
LTBP3-217ENST00000530785 WRNQ14191 1432 aaPredicted RBP eCLIP29.74■■■□□ 2.35
LTBP3-217ENST00000530785 HMGXB3Q12766 1538 aa29.67■■■□□ 2.34
LTBP3-217ENST00000530785 EEA1Q15075 1411 aa29.66■■■□□ 2.34
LTBP3-217ENST00000530785 SYNJ1O43426 1573 aa29.65■■■□□ 2.34
LTBP3-217ENST00000530785 RUSC2Q8N2Y8 1516 aa29.64■■■□□ 2.33
LTBP3-217ENST00000530785 ACIN1Q9UKV3 1341 aaKnown RBP29.62■■■□□ 2.33
LTBP3-217ENST00000530785 DNAJC5BQ9UF47 199 aa29.62■■■□□ 2.33
LTBP3-217ENST00000530785 CSRNP3Q8WYN3 585 aa29.53■■■□□ 2.32
LTBP3-217ENST00000530785 CEP162Q5TB80 1403 aa29.47■■■□□ 2.31
LTBP3-217ENST00000530785 TNIKQ9UKE5 1360 aa29.46■■■□□ 2.31
LTBP3-217ENST00000530785 NEUROD1Q13562 356 aa29.46■■■□□ 2.31
LTBP3-217ENST00000530785 GOLGA3Q08378 1498 aa29.4■■■□□ 2.3
LTBP3-217ENST00000530785 TOP2BQ02880 1626 aa29.36■■■□□ 2.29
LTBP3-217ENST00000530785 UBTFP17480 764 aaKnown RBP29.32■■■□□ 2.28
LTBP3-217ENST00000530785 KIF21BO75037 1637 aa29.31■■■□□ 2.28
LTBP3-217ENST00000530785 BIVM-ERCC5R4GMW8 1640 aa29.29■■■□□ 2.28
LTBP3-217ENST00000530785 CEP164Q9UPV0 1460 aa29.29■■■□□ 2.28
LTBP3-217ENST00000530785 GTF3C3Q9Y5Q9 886 aa29.29■■■□□ 2.28
LTBP3-217ENST00000530785 CENPBP07199 599 aaPredicted RBP29.21■■■□□ 2.27
LTBP3-217ENST00000530785 CFTRP13569 1480 aa29.19■■■□□ 2.26
LTBP3-217ENST00000530785 CUX1P39880 1505 aa29.12■■■□□ 2.25
LTBP3-217ENST00000530785 RAPGEF2Q9Y4G8 1499 aa29.1■■■□□ 2.25
LTBP3-217ENST00000530785 PRDM2Q13029 1718 aa29.06■■■□□ 2.24
LTBP3-217ENST00000530785 CADPSQ9ULU8 1353 aa29.05■■■□□ 2.24
LTBP3-217ENST00000530785 CLIP1P30622 1438 aa29.01■■■□□ 2.23
LTBP3-217ENST00000530785 TTBK1Q5TCY1 1321 aaPredicted RBP29■■■□□ 2.23
LTBP3-217ENST00000530785 NESP48681 1621 aa29■■■□□ 2.23
LTBP3-217ENST00000530785 DIEXFQ68CQ4 756 aaKnown RBP29■■■□□ 2.23
LTBP3-217ENST00000530785 PRXQ9BXM0 1461 aa28.91■■■□□ 2.22
LTBP3-217ENST00000530785 ERICH3Q5RHP9 1530 aa28.91■■■□□ 2.22
LTBP3-217ENST00000530785 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.87■■■□□ 2.21
LTBP3-217ENST00000530785 KIF27Q86VH2 1401 aa28.86■■■□□ 2.21
LTBP3-217ENST00000530785 VPS8Q8N3P4 1428 aa28.86■■■□□ 2.21
LTBP3-217ENST00000530785 CCER1Q8TC90 406 aaPredicted RBP28.85■■■□□ 2.21
LTBP3-217ENST00000530785 LAMC3Q9Y6N6 1575 aa28.8■■■□□ 2.2
LTBP3-217ENST00000530785 RANGAP1P46060 587 aaPredicted RBP28.76■■■□□ 2.19
LTBP3-217ENST00000530785 FANCD2Q9BXW9 1451 aa28.74■■■□□ 2.19
LTBP3-217ENST00000530785 CUX2O14529 1486 aa28.66■■■□□ 2.18
LTBP3-217ENST00000530785 FGD5Q6ZNL6 1462 aa28.66■■■□□ 2.18
LTBP3-217ENST00000530785 ARAP1Q96P48 1450 aa28.63■■■□□ 2.17
LTBP3-217ENST00000530785 PDS5BQ9NTI5 1447 aa28.62■■■□□ 2.17
LTBP3-217ENST00000530785 APLP2Q06481 763 aa28.58■■■□□ 2.17
LTBP3-217ENST00000530785 KIF21AQ7Z4S6 1674 aa28.57■■■□□ 2.16
LTBP3-217ENST00000530785 IGF1RP08069 1367 aa28.55■■■□□ 2.16
LTBP3-217ENST00000530785 DNMBPQ6XZF7 1577 aa28.5■■■□□ 2.15
LTBP3-217ENST00000530785 ZNF316A6NFI3 1004 aaPredicted RBP28.48■■■□□ 2.15
LTBP3-217ENST00000530785 ARHGAP35Q9NRY4 1499 aa28.45■■■□□ 2.14
LTBP3-217ENST00000530785 TOPBP1Q92547 1522 aa28.43■■■□□ 2.14
LTBP3-217ENST00000530785 CARMIL1Q5VZK9 1371 aa28.42■■■□□ 2.14
LTBP3-217ENST00000530785 URB2Q14146 1524 aaKnown RBP28.41■■■□□ 2.14
LTBP3-217ENST00000530785 POLA1P09884 1462 aaPredicted RBP28.39■■■□□ 2.13
LTBP3-217ENST00000530785 HNRNPUL2Q1KMD3 747 aaKnown RBP28.38■■■□□ 2.13
LTBP3-217ENST00000530785 RAD54L2Q9Y4B4 1467 aa28.37■■■□□ 2.13
LTBP3-217ENST00000530785 ERCC6Q03468 1493 aa28.36■■■□□ 2.13
LTBP3-217ENST00000530785 ABCA10Q8WWZ4 1543 aa28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms