RNA–Protein interactions for RNA: ENST00000452489.6

PTPA-223, Transcript of protein phosphatase 2 phosphatase activator, humanhuman

TSL 1 (best) BASIC

Gene PTPA, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPA-223ENST00000452489 NISCHQ9Y2I1 1504 aa33.41■■■□□ 2.94
PTPA-223ENST00000452489 HRCP23327 699 aa31.94■■■□□ 2.7
PTPA-223ENST00000452489 PELP1Q8IZL8 1130 aaKnown RBP31.6■■■□□ 2.65
PTPA-223ENST00000452489 PPARGC1BQ86YN6 1023 aaKnown RBP31.39■■■□□ 2.62
PTPA-223ENST00000452489 PCGF6Q9BYE7 350 aa31.03■■■□□ 2.56
PTPA-223ENST00000452489 SCAF1Q9H7N4 1312 aaKnown RBP30.64■■■□□ 2.5
PTPA-223ENST00000452489 MYO15BQ96JP2 1530 aa30.57■■■□□ 2.48
PTPA-223ENST00000452489 MYT1Q01538 1121 aa30.49■■■□□ 2.47
PTPA-223ENST00000452489 SUPT5HO00267 1087 aaKnown RBP30.42■■■□□ 2.46
PTPA-223ENST00000452489 SHROOM4Q9ULL8 1493 aa30.32■■■□□ 2.44
PTPA-223ENST00000452489 CHIC1Q5VXU3 224 aa30.12■■■□□ 2.41
PTPA-223ENST00000452489 DCAF1Q9Y4B6 1507 aa29.92■■■□□ 2.38
PTPA-223ENST00000452489 TRIM26Q12899 539 aaPredicted RBP29.77■■■□□ 2.36
PTPA-223ENST00000452489 CCDC180Q9P1Z9 1646 aa29.68■■■□□ 2.34
PTPA-223ENST00000452489 ZEB1P37275 1124 aaPredicted RBP29.66■■■□□ 2.34
PTPA-223ENST00000452489 ACIN1Q9UKV3 1341 aaKnown RBP29.62■■■□□ 2.33
PTPA-223ENST00000452489 NEUROD1Q13562 356 aa29.57■■■□□ 2.32
PTPA-223ENST00000452489 LOC105371045A0A1W2PR82 267 aa29.56■■■□□ 2.32
PTPA-223ENST00000452489 GTF3C3Q9Y5Q9 886 aa29.45■■■□□ 2.3
PTPA-223ENST00000452489 CENPBP07199 599 aaPredicted RBP29.08■■■□□ 2.24
PTPA-223ENST00000452489 DIEXFQ68CQ4 756 aaKnown RBP28.78■■■□□ 2.2
PTPA-223ENST00000452489 TTBK1Q5TCY1 1321 aaPredicted RBP28.76■■■□□ 2.19
PTPA-223ENST00000452489 BCL11AQ9H165 835 aa28.69■■■□□ 2.18
PTPA-223ENST00000452489 ZCCHC6Q5VYS8 1495 aaKnown RBP28.55■■■□□ 2.16
PTPA-223ENST00000452489 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.55■■■□□ 2.16
PTPA-223ENST00000452489 FAM9AQ8IZU1 332 aaPredicted RBP28.51■■■□□ 2.15
PTPA-223ENST00000452489 YTHDC1Q96MU7 727 aaKnown RBP28.47■■■□□ 2.15
PTPA-223ENST00000452489 CCER1Q8TC90 406 aaPredicted RBP28.45■■■□□ 2.15
PTPA-223ENST00000452489 TRIM41Q8WV44 630 aa28.27■■■□□ 2.12
PTPA-223ENST00000452489 ANP32EQ9BTT0 268 aa28.26■■■□□ 2.11
PTPA-223ENST00000452489 EHMT2Q96KQ7 1210 aa28.15■■■□□ 2.1
PTPA-223ENST00000452489 CSRNP3Q8WYN3 585 aa28.05■■■□□ 2.08
PTPA-223ENST00000452489 ZNF316A6NFI3 1004 aaPredicted RBP28.04■■■□□ 2.08
PTPA-223ENST00000452489 MIER1Q8N108 512 aa28.02■■■□□ 2.08
PTPA-223ENST00000452489 PRKCSHP14314 528 aaPredicted RBP27.98■■■□□ 2.07
PTPA-223ENST00000452489 TSHZ2Q9NRE2 1034 aa27.93■■■□□ 2.06
PTPA-223ENST00000452489 DCAF8L2P0C7V8 631 aa27.91■■■□□ 2.06
PTPA-223ENST00000452489 SUPT16HQ9Y5B9 1047 aaKnown RBP27.87■■■□□ 2.05
PTPA-223ENST00000452489 CLSPNQ9HAW4 1339 aa27.6■■■□□ 2.01
PTPA-223ENST00000452489 ABCC9O60706 1549 aa27.26■■□□□ 1.95
PTPA-223ENST00000452489 RB1CC1Q8TDY2 1594 aa27.26■■□□□ 1.95
PTPA-223ENST00000452489 BCANQ96GW7 911 aa27.25■■□□□ 1.95
PTPA-223ENST00000452489 RSF1Q96T23 1441 aaPredicted RBP27.2■■□□□ 1.95
PTPA-223ENST00000452489 RBM19Q9Y4C8 960 aaKnown RBP27.19■■□□□ 1.94
PTPA-223ENST00000452489 ERICH6Q7L0X2 663 aa27.17■■□□□ 1.94
PTPA-223ENST00000452489 WRNQ14191 1432 aaPredicted RBP eCLIP27.14■■□□□ 1.931e-6■■□□□ 12
PTPA-223ENST00000452489 MSH5O43196 834 aa27.08■■□□□ 1.92
PTPA-223ENST00000452489 FKBP8Q14318 412 aa26.99■■□□□ 1.91
PTPA-223ENST00000452489 HNRNPUL2Q1KMD3 747 aaKnown RBP26.99■■□□□ 1.91
PTPA-223ENST00000452489 CEP162Q5TB80 1403 aa26.92■■□□□ 1.9
PTPA-223ENST00000452489 APLP2Q06481 763 aa26.91■■□□□ 1.9
PTPA-223ENST00000452489 ANO8Q9HCE9 1232 aaPredicted RBP26.89■■□□□ 1.89
PTPA-223ENST00000452489 KCNH8Q96L42 1107 aa26.88■■□□□ 1.89
PTPA-223ENST00000452489 ITGAEP38570 1179 aa26.84■■□□□ 1.89
PTPA-223ENST00000452489 DEKP35659 375 aaKnown RBP26.73■■□□□ 1.87
PTPA-223ENST00000452489 FANCIQ9NVI1 1328 aa26.66■■□□□ 1.86
PTPA-223ENST00000452489 NEFLP07196 543 aa26.64■■□□□ 1.86
PTPA-223ENST00000452489 TNIKQ9UKE5 1360 aa26.62■■□□□ 1.85
PTPA-223ENST00000452489 SALL2Q9Y467 1007 aaPredicted RBP26.57■■□□□ 1.84
PTPA-223ENST00000452489 MYT1LQ9UL68 1186 aa26.56■■□□□ 1.84
PTPA-223ENST00000452489 UBTFP17480 764 aaKnown RBP26.49■■□□□ 1.83
PTPA-223ENST00000452489 DHX57Q6P158 1386 aaKnown RBP26.46■■□□□ 1.83
PTPA-223ENST00000452489 ABCC8Q09428 1581 aa26.45■■□□□ 1.82
PTPA-223ENST00000452489 CCDC136Q96JN2 1154 aa26.44■■□□□ 1.82
PTPA-223ENST00000452489 SCRIBQ14160 1630 aa26.44■■□□□ 1.82
PTPA-223ENST00000452489 CCDC88BA6NC98 1476 aa26.43■■□□□ 1.82
PTPA-223ENST00000452489 SOGA1O94964 1423 aa26.4■■□□□ 1.82
PTPA-223ENST00000452489 TRIM52Q96A61 297 aa26.38■■□□□ 1.81
PTPA-223ENST00000452489 EIF4G1Q04637 1599 aaKnown RBP26.36■■□□□ 1.81
PTPA-223ENST00000452489 CDK11AQ9UQ88 783 aaPredicted RBP26.36■■□□□ 1.81
PTPA-223ENST00000452489 NBR1Q14596 966 aa26.3■■□□□ 1.8
PTPA-223ENST00000452489 ERICH6BQ5W0A0 696 aa26.3■■□□□ 1.8
PTPA-223ENST00000452489 CECR2Q9BXF3 1484 aa26.25■■□□□ 1.79
PTPA-223ENST00000452489 MROH2BQ7Z745 1585 aa26.24■■□□□ 1.79
PTPA-223ENST00000452489 RUSC2Q8N2Y8 1516 aa26.24■■□□□ 1.79
PTPA-223ENST00000452489 DDX10Q13206 875 aaKnown RBP26.24■■□□□ 1.79
PTPA-223ENST00000452489 IRX6P78412 446 aaPredicted RBP26.22■■□□□ 1.79
PTPA-223ENST00000452489 WIZO95785 1651 aa26.21■■□□□ 1.79
PTPA-223ENST00000452489 UBE2Q2Q8WVN8 375 aa26.2■■□□□ 1.79
PTPA-223ENST00000452489 IL27Q8NEV9 243 aa26.19■■□□□ 1.78
PTPA-223ENST00000452489 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.19■■□□□ 1.78
PTPA-223ENST00000452489 GOLGA3Q08378 1498 aa26.18■■□□□ 1.78
PTPA-223ENST00000452489 RTN4Q9NQC3 1192 aaKnown RBP26.16■■□□□ 1.78
PTPA-223ENST00000452489 PAK3O75914 559 aaPredicted RBP26.12■■□□□ 1.77
PTPA-223ENST00000452489 NOP58Q9Y2X3 529 aaKnown RBP26.12■■□□□ 1.77
PTPA-223ENST00000452489 CLIP1P30622 1438 aa26.11■■□□□ 1.77
PTPA-223ENST00000452489 VPS8Q8N3P4 1428 aa26.08■■□□□ 1.77
PTPA-223ENST00000452489 EEA1Q15075 1411 aa26.07■■□□□ 1.76
PTPA-223ENST00000452489 NACADO15069 1562 aa26.07■■□□□ 1.76
PTPA-223ENST00000452489 PPP1R15AO75807 674 aaPredicted RBP26.02■■□□□ 1.76
PTPA-223ENST00000452489 CCER2I3L3R5 266 aa26■■□□□ 1.75
PTPA-223ENST00000452489 BAZ1AQ9NRL2 1556 aaPredicted RBP25.95■■□□□ 1.74
PTPA-223ENST00000452489 ANP32CO43423 234 aa25.93■■□□□ 1.74
PTPA-223ENST00000452489 RTL5Q5HYW3 569 aaPredicted RBP25.91■■□□□ 1.74
PTPA-223ENST00000452489 RANGAP1P46060 587 aaPredicted RBP25.9■■□□□ 1.74
PTPA-223ENST00000452489 HIRIP3Q9BW71 556 aaPredicted RBP25.9■■□□□ 1.74
PTPA-223ENST00000452489 PPP4R2Q9NY27 417 aa25.88■■□□□ 1.73
PTPA-223ENST00000452489 WDR97A6NE52 1622 aa25.84■■□□□ 1.73
PTPA-223ENST00000452489 HNRNPUQ00839 825 aaKnown RBP eCLIP25.84■■□□□ 1.73
PTPA-223ENST00000452489 B4GALNT3Q6L9W6 998 aa25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms