Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
MMP28Q9H239 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
MMP28Q9H239 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.66■□□□□ 0.58
MMP28Q9H239 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
MMP28Q9H239 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
MMP28Q9H239 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.66■□□□□ 0.58
MMP28Q9H239 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.66■□□□□ 0.58
MMP28Q9H239 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MMP28Q9H239 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.65■□□□□ 0.58
MMP28Q9H239 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MMP28Q9H239 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
MMP28Q9H239 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MMP28Q9H239 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.65■□□□□ 0.58
MMP28Q9H239 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
MMP28Q9H239 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
MMP28Q9H239 AL356441.2-201ENST00000443009 864 ntBASIC18.65■□□□□ 0.58
MMP28Q9H239 SNX5-217ENST00000606557 1087 ntBASIC18.65■□□□□ 0.58
MMP28Q9H239 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.65■□□□□ 0.58
MMP28Q9H239 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
MMP28Q9H239 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
MMP28Q9H239 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
MMP28Q9H239 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
MMP28Q9H239 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
MMP28Q9H239 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
MMP28Q9H239 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MMP28Q9H239 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MMP28Q9H239 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MMP28Q9H239 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
MMP28Q9H239 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.64■□□□□ 0.57
MMP28Q9H239 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.64■□□□□ 0.57
MMP28Q9H239 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.64■□□□□ 0.57
MMP28Q9H239 MIR4787-201ENST00000607364 84 ntBASIC18.64■□□□□ 0.57
MMP28Q9H239 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.64■□□□□ 0.57
MMP28Q9H239 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
MMP28Q9H239 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.64■□□□□ 0.57
MMP28Q9H239 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MMP28Q9H239 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
MMP28Q9H239 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.64■□□□□ 0.57
MMP28Q9H239 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MMP28Q9H239 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MMP28Q9H239 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MMP28Q9H239 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MMP28Q9H239 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
MMP28Q9H239 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MMP28Q9H239 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.63■□□□□ 0.57
MMP28Q9H239 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.63■□□□□ 0.57
MMP28Q9H239 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.63■□□□□ 0.57
MMP28Q9H239 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.63■□□□□ 0.57
MMP28Q9H239 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
MMP28Q9H239 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MMP28Q9H239 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MMP28Q9H239 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MMP28Q9H239 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MMP28Q9H239 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
MMP28Q9H239 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.62■□□□□ 0.57
MMP28Q9H239 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MMP28Q9H239 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.62■□□□□ 0.57
MMP28Q9H239 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MMP28Q9H239 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.62■□□□□ 0.57
MMP28Q9H239 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.62■□□□□ 0.57
MMP28Q9H239 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MMP28Q9H239 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MMP28Q9H239 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
MMP28Q9H239 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
MMP28Q9H239 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MMP28Q9H239 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MMP28Q9H239 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MMP28Q9H239 AC144652.1-201ENST00000609974 1624 ntBASIC18.61■□□□□ 0.57
MMP28Q9H239 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.61■□□□□ 0.57
MMP28Q9H239 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MMP28Q9H239 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MMP28Q9H239 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC18.61■□□□□ 0.57
MMP28Q9H239 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.61■□□□□ 0.57
MMP28Q9H239 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.61■□□□□ 0.57
MMP28Q9H239 AC092028.1-203ENST00000608262 953 ntBASIC18.61■□□□□ 0.57
MMP28Q9H239 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
MMP28Q9H239 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MMP28Q9H239 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MMP28Q9H239 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MMP28Q9H239 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
MMP28Q9H239 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.6■□□□□ 0.57
MMP28Q9H239 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.6■□□□□ 0.57
MMP28Q9H239 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms