RNA–Protein interactions for RNA: ENST00000543473.1

SUDS3-204, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SUDS3, Length 4,897 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-204ENST00000543473 NISCHQ9Y2I1 1504 aa33.94■■■■□ 3.02
SUDS3-204ENST00000543473 DCAF8L2P0C7V8 631 aa33.44■■■□□ 2.94
SUDS3-204ENST00000543473 SUPT5HO00267 1087 aaKnown RBP31.93■■■□□ 2.7
SUDS3-204ENST00000543473 SHROOM4Q9ULL8 1493 aa31.59■■■□□ 2.65
SUDS3-204ENST00000543473 PCGF6Q9BYE7 350 aa30.76■■■□□ 2.52
SUDS3-204ENST00000543473 EHMT2Q96KQ7 1210 aa30.54■■■□□ 2.48
SUDS3-204ENST00000543473 PELP1Q8IZL8 1130 aaKnown RBP30.39■■■□□ 2.46
SUDS3-204ENST00000543473 ZEB1P37275 1124 aaPredicted RBP30.08■■■□□ 2.41
SUDS3-204ENST00000543473 FAM9AQ8IZU1 332 aaPredicted RBP29.99■■■□□ 2.39
SUDS3-204ENST00000543473 CENPBP07199 599 aaPredicted RBP29.96■■■□□ 2.39
SUDS3-204ENST00000543473 HRCP23327 699 aa29.87■■■□□ 2.37
SUDS3-204ENST00000543473 MYT1Q01538 1121 aa29.68■■■□□ 2.34
SUDS3-204ENST00000543473 APLP2Q06481 763 aa29.68■■■□□ 2.34
SUDS3-204ENST00000543473 TTBK1Q5TCY1 1321 aaPredicted RBP29.67■■■□□ 2.34
SUDS3-204ENST00000543473 CCER1Q8TC90 406 aaPredicted RBP29.65■■■□□ 2.34
SUDS3-204ENST00000543473 TRIM41Q8WV44 630 aa29.5■■■□□ 2.31
SUDS3-204ENST00000543473 TRIM26Q12899 539 aaPredicted RBP29.42■■■□□ 2.3
SUDS3-204ENST00000543473 PPARGC1BQ86YN6 1023 aaKnown RBP29.25■■■□□ 2.27
SUDS3-204ENST00000543473 YTHDC1Q96MU7 727 aaKnown RBP29.22■■■□□ 2.27
SUDS3-204ENST00000543473 CHIC1Q5VXU3 224 aa29.14■■■□□ 2.26
SUDS3-204ENST00000543473 ERICH6Q7L0X2 663 aa29.12■■■□□ 2.25
SUDS3-204ENST00000543473 ABCC9O60706 1549 aa29.1■■■□□ 2.25
SUDS3-204ENST00000543473 LOC105371045A0A1W2PR82 267 aa29.03■■■□□ 2.24
SUDS3-204ENST00000543473 RANGAP1P46060 587 aaPredicted RBP29.02■■■□□ 2.24
SUDS3-204ENST00000543473 UBTFP17480 764 aaKnown RBP28.86■■■□□ 2.21
SUDS3-204ENST00000543473 NEFLP07196 543 aa28.8■■■□□ 2.2
SUDS3-204ENST00000543473 PABPN1Q86U42 306 aaKnown RBP eCLIP28.64■■■□□ 2.18
SUDS3-204ENST00000543473 ATP1B4Q9UN42 357 aaPredicted RBP28.59■■■□□ 2.17
SUDS3-204ENST00000543473 DIEXFQ68CQ4 756 aaKnown RBP28.49■■■□□ 2.15
SUDS3-204ENST00000543473 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.44■■■□□ 2.14
SUDS3-204ENST00000543473 GTF3C3Q9Y5Q9 886 aa28.31■■■□□ 2.12
SUDS3-204ENST00000543473 HNRNPUL2Q1KMD3 747 aaKnown RBP28.25■■■□□ 2.11
SUDS3-204ENST00000543473 ZCCHC6Q5VYS8 1495 aaKnown RBP28.15■■■□□ 2.1
SUDS3-204ENST00000543473 CCDC180Q9P1Z9 1646 aa28.07■■■□□ 2.08
SUDS3-204ENST00000543473 ACIN1Q9UKV3 1341 aaKnown RBP28.05■■■□□ 2.08
SUDS3-204ENST00000543473 ITGAEP38570 1179 aa28■■■□□ 2.07
SUDS3-204ENST00000543473 SCRIBQ14160 1630 aa27.88■■■□□ 2.05
SUDS3-204ENST00000543473 ZNF316A6NFI3 1004 aaPredicted RBP27.77■■■□□ 2.04
SUDS3-204ENST00000543473 BCANQ96GW7 911 aa27.66■■■□□ 2.02
SUDS3-204ENST00000543473 DAXXQ9UER7 740 aaPredicted RBP27.64■■■□□ 2.01
SUDS3-204ENST00000543473 DCAF1Q9Y4B6 1507 aa27.62■■■□□ 2.01
SUDS3-204ENST00000543473 SCAF1Q9H7N4 1312 aaKnown RBP27.58■■■□□ 2.01
SUDS3-204ENST00000543473 RTL5Q5HYW3 569 aaPredicted RBP27.54■■■□□ 2
SUDS3-204ENST00000543473 POLR3GLQ9BT43 218 aa27.53■■■□□ 2
SUDS3-204ENST00000543473 NEUROD1Q13562 356 aa27.5■■□□□ 1.99
SUDS3-204ENST00000543473 CNGB1Q14028 1251 aaPredicted RBP27.44■■□□□ 1.98
SUDS3-204ENST00000543473 MYT1LQ9UL68 1186 aa27.33■■□□□ 1.97
SUDS3-204ENST00000543473 RB1CC1Q8TDY2 1594 aa27.32■■□□□ 1.96
SUDS3-204ENST00000543473 CDK11AQ9UQ88 783 aaPredicted RBP27.32■■□□□ 1.96
SUDS3-204ENST00000543473 ANP32CO43423 234 aa27.28■■□□□ 1.96
SUDS3-204ENST00000543473 CSRNP3Q8WYN3 585 aa27.28■■□□□ 1.96
SUDS3-204ENST00000543473 FAM50AQ14320 339 aaKnown RBP27.24■■□□□ 1.95
SUDS3-204ENST00000543473 CLSPNQ9HAW4 1339 aa27.22■■□□□ 1.95
SUDS3-204ENST00000543473 FBLN2P98095 1184 aa27.19■■□□□ 1.94
SUDS3-204ENST00000543473 NACADO15069 1562 aa27.17■■□□□ 1.94
SUDS3-204ENST00000543473 MYO15BQ96JP2 1530 aa27.14■■□□□ 1.94
SUDS3-204ENST00000543473 RSF1Q96T23 1441 aaPredicted RBP27.05■■□□□ 1.92
SUDS3-204ENST00000543473 FKBP8Q14318 412 aa27.03■■□□□ 1.92
SUDS3-204ENST00000543473 P3H3Q8IVL6 736 aa27.02■■□□□ 1.92
SUDS3-204ENST00000543473 TRIM52Q96A61 297 aa26.94■■□□□ 1.9
SUDS3-204ENST00000543473 MIER1Q8N108 512 aa26.94■■□□□ 1.9
SUDS3-204ENST00000543473 ARID3CA6NKF2 412 aa26.83■■□□□ 1.89
SUDS3-204ENST00000543473 ANP32AP39687 249 aaKnown RBP26.8■■□□□ 1.88
SUDS3-204ENST00000543473 DDX10Q13206 875 aaKnown RBP26.73■■□□□ 1.87
SUDS3-204ENST00000543473 CECR2Q9BXF3 1484 aa26.7■■□□□ 1.86
SUDS3-204ENST00000543473 HNRNPUQ00839 825 aaKnown RBP eCLIP26.65■■□□□ 1.86
SUDS3-204ENST00000543473 ZNF326Q5BKZ1 582 aaKnown RBP26.65■■□□□ 1.86
SUDS3-204ENST00000543473 BAZ1BQ9UIG0 1483 aaKnown RBP26.65■■□□□ 1.86
SUDS3-204ENST00000543473 BAZ1AQ9NRL2 1556 aaPredicted RBP26.59■■□□□ 1.85
SUDS3-204ENST00000543473 NPM2Q86SE8 214 aaKnown RBP26.57■■□□□ 1.84
SUDS3-204ENST00000543473 ANP32EQ9BTT0 268 aa26.55■■□□□ 1.84
SUDS3-204ENST00000543473 SLC4A1APQ9BWU0 796 aaKnown RBP26.52■■□□□ 1.84
SUDS3-204ENST00000543473 ZNF777Q9ULD5 760 aaPredicted RBP26.48■■□□□ 1.83
SUDS3-204ENST00000543473 TONSLQ96HA7 1378 aa26.47■■□□□ 1.83
SUDS3-204ENST00000543473 WRNQ14191 1432 aaPredicted RBP eCLIP26.47■■□□□ 1.83
SUDS3-204ENST00000543473 EIF5BO60841 1220 aaKnown RBP26.45■■□□□ 1.83
SUDS3-204ENST00000543473 NBR1Q14596 966 aa26.44■■□□□ 1.82
SUDS3-204ENST00000543473 FAM9BQ8IZU0 186 aa26.42■■□□□ 1.82
SUDS3-204ENST00000543473 ZBTB47Q9UFB7 747 aaPredicted RBP26.35■■□□□ 1.81
SUDS3-204ENST00000543473 IRX6P78412 446 aaPredicted RBP26.33■■□□□ 1.81
SUDS3-204ENST00000543473 MROH2BQ7Z745 1585 aa26.33■■□□□ 1.81
SUDS3-204ENST00000543473 CLIP1P30622 1438 aa26.33■■□□□ 1.8
SUDS3-204ENST00000543473 EEA1Q15075 1411 aa26.32■■□□□ 1.8
SUDS3-204ENST00000543473 CCDC136Q96JN2 1154 aa26.32■■□□□ 1.8
SUDS3-204ENST00000543473 CHMP7Q8WUX9 453 aaPredicted RBP26.31■■□□□ 1.8
SUDS3-204ENST00000543473 SUPT16HQ9Y5B9 1047 aaKnown RBP26.27■■□□□ 1.8
SUDS3-204ENST00000543473 CANXP27824 592 aaKnown RBP26.26■■□□□ 1.79
SUDS3-204ENST00000543473 CEP162Q5TB80 1403 aa26.25■■□□□ 1.79
SUDS3-204ENST00000543473 HIRIP3Q9BW71 556 aaPredicted RBP26.25■■□□□ 1.79
SUDS3-204ENST00000543473 GOLGA3Q08378 1498 aa26.21■■□□□ 1.79
SUDS3-204ENST00000543473 MRS2Q9HD23 443 aa26.19■■□□□ 1.78
SUDS3-204ENST00000543473 KIF27Q86VH2 1401 aa26.17■■□□□ 1.78
SUDS3-204ENST00000543473 MTUS2Q5JR59 1369 aa26.13■■□□□ 1.77
SUDS3-204ENST00000543473 CHIC2Q9UKJ5 165 aa26.11■■□□□ 1.77
SUDS3-204ENST00000543473 NPM1P06748 294 aaKnown RBP eCLIP26.1■■□□□ 1.77
SUDS3-204ENST00000543473 CCDC88BA6NC98 1476 aa26.09■■□□□ 1.77
SUDS3-204ENST00000543473 SALL2Q9Y467 1007 aaPredicted RBP26.09■■□□□ 1.77
SUDS3-204ENST00000543473 TMC1Q8TDI8 760 aa26.08■■□□□ 1.76
SUDS3-204ENST00000543473 TNIKQ9UKE5 1360 aa26.04■■□□□ 1.76
SUDS3-204ENST00000543473 CEP164Q9UPV0 1460 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms