Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 PXK-203ENST00000383715 1756 ntTSL 5 BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 AC009237.3-201ENST00000393279 1427 ntBASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHA1Q9Y5I3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHA1Q9Y5I3 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHA1Q9Y5I3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHA1Q9Y5I3 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.83■■□□□ 1.57
PCDHA1Q9Y5I3 AC005224.4-201ENST00000583262 1652 ntBASIC24.83■■□□□ 1.57
PCDHA1Q9Y5I3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.83■■□□□ 1.57
PCDHA1Q9Y5I3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHA1Q9Y5I3 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.56
PCDHA1Q9Y5I3 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 AP004607.7-201ENST00000527152 1677 ntBASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 AC139530.1-201ENST00000575312 1977 ntBASIC24.82■■□□□ 1.56
PCDHA1Q9Y5I3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 CPT2-209ENST00000636935 803 ntTSL 5 BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 ESRRAP2-201ENST00000418437 1549 ntBASIC24.81■■□□□ 1.56
PCDHA1Q9Y5I3 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 AC022517.1-201ENST00000592429 346 ntBASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA1Q9Y5I3 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA1Q9Y5I3 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.79■■□□□ 1.56
PCDHA1Q9Y5I3 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
PCDHA1Q9Y5I3 KRT18P61-201ENST00000585825 1298 ntBASIC24.79■■□□□ 1.56
PCDHA1Q9Y5I3 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC24.79■■□□□ 1.56
PCDHA1Q9Y5I3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA1Q9Y5I3 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
PCDHA1Q9Y5I3 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
PCDHA1Q9Y5I3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA1Q9Y5I3 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHA1Q9Y5I3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 AC079140.4-201ENST00000507448 529 ntBASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 AP004607.4-201ENST00000530158 1459 ntBASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC24.77■■□□□ 1.56
PCDHA1Q9Y5I3 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.76■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms