Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.1■■■□□ 2.57
DDX41Q9UJV9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
DDX41Q9UJV9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
DDX41Q9UJV9 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
DDX41Q9UJV9 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
DDX41Q9UJV9 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
DDX41Q9UJV9 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.07■■■□□ 2.57
DDX41Q9UJV9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.07■■■□□ 2.56
DDX41Q9UJV9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
DDX41Q9UJV9 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.05■■■□□ 2.56
DDX41Q9UJV9 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
DDX41Q9UJV9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
DDX41Q9UJV9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
DDX41Q9UJV9 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
DDX41Q9UJV9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.99■■■□□ 2.55
DDX41Q9UJV9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.98■■■□□ 2.55
DDX41Q9UJV9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.98■■■□□ 2.55
DDX41Q9UJV9 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
DDX41Q9UJV9 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
DDX41Q9UJV9 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
DDX41Q9UJV9 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
DDX41Q9UJV9 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
DDX41Q9UJV9 MIR762-201ENST00000390236 83 ntBASIC30.95■■■□□ 2.55
DDX41Q9UJV9 MIR3665-201ENST00000578708 105 ntBASIC30.95■■■□□ 2.55
DDX41Q9UJV9 WASH5P-204ENST00000632292 975 ntBASIC30.95■■■□□ 2.55
DDX41Q9UJV9 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.95■■■□□ 2.55
DDX41Q9UJV9 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.94■■■□□ 2.54
DDX41Q9UJV9 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.93■■■□□ 2.54
DDX41Q9UJV9 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
DDX41Q9UJV9 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
DDX41Q9UJV9 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
DDX41Q9UJV9 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
DDX41Q9UJV9 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
DDX41Q9UJV9 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.9■■■□□ 2.54
DDX41Q9UJV9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
DDX41Q9UJV9 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
DDX41Q9UJV9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.9■■■□□ 2.54
DDX41Q9UJV9 DUX4L28-201ENST00000623687 678 ntBASIC30.9■■■□□ 2.54
DDX41Q9UJV9 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
DDX41Q9UJV9 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
DDX41Q9UJV9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.87■■■□□ 2.53
DDX41Q9UJV9 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
DDX41Q9UJV9 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
DDX41Q9UJV9 AC087741.3-201ENST00000624270 1347 ntBASIC30.84■■■□□ 2.53
DDX41Q9UJV9 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
DDX41Q9UJV9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.83■■■□□ 2.53
DDX41Q9UJV9 AC005559.1-201ENST00000589661 871 ntBASIC30.82■■■□□ 2.52
DDX41Q9UJV9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
DDX41Q9UJV9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
DDX41Q9UJV9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.79■■■□□ 2.52
DDX41Q9UJV9 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.79■■■□□ 2.52
DDX41Q9UJV9 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
DDX41Q9UJV9 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
DDX41Q9UJV9 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.77■■■□□ 2.52
DDX41Q9UJV9 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
DDX41Q9UJV9 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
DDX41Q9UJV9 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
DDX41Q9UJV9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.75■■■□□ 2.51
DDX41Q9UJV9 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.75■■■□□ 2.51
DDX41Q9UJV9 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.75■■■□□ 2.51
DDX41Q9UJV9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
DDX41Q9UJV9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.74■■■□□ 2.51
DDX41Q9UJV9 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
DDX41Q9UJV9 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
DDX41Q9UJV9 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
DDX41Q9UJV9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.72■■■□□ 2.51
DDX41Q9UJV9 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.72■■■□□ 2.51
DDX41Q9UJV9 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.71■■■□□ 2.51
DDX41Q9UJV9 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
DDX41Q9UJV9 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
DDX41Q9UJV9 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.7■■■□□ 2.5
DDX41Q9UJV9 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
DDX41Q9UJV9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
DDX41Q9UJV9 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
DDX41Q9UJV9 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
DDX41Q9UJV9 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
DDX41Q9UJV9 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.68■■■□□ 2.5
DDX41Q9UJV9 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
DDX41Q9UJV9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
DDX41Q9UJV9 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.67■■■□□ 2.5
DDX41Q9UJV9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
DDX41Q9UJV9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.65■■■□□ 2.5
DDX41Q9UJV9 AC044849.2-201ENST00000606596 710 ntBASIC30.65■■■□□ 2.5
DDX41Q9UJV9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
DDX41Q9UJV9 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
DDX41Q9UJV9 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
DDX41Q9UJV9 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
DDX41Q9UJV9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
DDX41Q9UJV9 AL161658.1-201ENST00000623641 1967 ntBASIC30.63■■■□□ 2.49
DDX41Q9UJV9 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
DDX41Q9UJV9 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
DDX41Q9UJV9 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.59■■■□□ 2.49
DDX41Q9UJV9 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
DDX41Q9UJV9 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
DDX41Q9UJV9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
DDX41Q9UJV9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
DDX41Q9UJV9 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
DDX41Q9UJV9 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.57■■■□□ 2.48
DDX41Q9UJV9 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.57■■■□□ 2.48
DDX41Q9UJV9 ABHD17AP4-201ENST00000411545 909 ntBASIC30.57■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms