Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CUEDC1Q9NWM3 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
CUEDC1Q9NWM3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC26.26■■□□□ 1.79
CUEDC1Q9NWM3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CUEDC1Q9NWM3 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CUEDC1Q9NWM3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUEDC1Q9NWM3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CUEDC1Q9NWM3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC26.22■■□□□ 1.79
CUEDC1Q9NWM3 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CUEDC1Q9NWM3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC26.21■■□□□ 1.79
CUEDC1Q9NWM3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.78
CUEDC1Q9NWM3 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUEDC1Q9NWM3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUEDC1Q9NWM3 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUEDC1Q9NWM3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC26.17■■□□□ 1.78
CUEDC1Q9NWM3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CUEDC1Q9NWM3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUEDC1Q9NWM3 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
CUEDC1Q9NWM3 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
CUEDC1Q9NWM3 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUEDC1Q9NWM3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CUEDC1Q9NWM3 RPS2P35-201ENST00000443417 897 ntBASIC26.14■■□□□ 1.78
CUEDC1Q9NWM3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CUEDC1Q9NWM3 WASH5P-204ENST00000632292 975 ntBASIC26.13■■□□□ 1.77
CUEDC1Q9NWM3 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CUEDC1Q9NWM3 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CUEDC1Q9NWM3 CAHM-201ENST00000604200 896 ntBASIC26.12■■□□□ 1.77
CUEDC1Q9NWM3 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.11■■□□□ 1.77
CUEDC1Q9NWM3 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CUEDC1Q9NWM3 AL391121.1-201ENST00000607967 1349 ntBASIC26.09■■□□□ 1.77
CUEDC1Q9NWM3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.77
CUEDC1Q9NWM3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.08■■□□□ 1.76
CUEDC1Q9NWM3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CUEDC1Q9NWM3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CUEDC1Q9NWM3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CUEDC1Q9NWM3 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.06■■□□□ 1.76
CUEDC1Q9NWM3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CUEDC1Q9NWM3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUEDC1Q9NWM3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CUEDC1Q9NWM3 SUZ12P1-203ENST00000578195 985 ntBASIC26.04■■□□□ 1.76
CUEDC1Q9NWM3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC26.03■■□□□ 1.76
CUEDC1Q9NWM3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUEDC1Q9NWM3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUEDC1Q9NWM3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUEDC1Q9NWM3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUEDC1Q9NWM3 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUEDC1Q9NWM3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUEDC1Q9NWM3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CUEDC1Q9NWM3 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26■■□□□ 1.75
CUEDC1Q9NWM3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CUEDC1Q9NWM3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUEDC1Q9NWM3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
CUEDC1Q9NWM3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUEDC1Q9NWM3 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.98■■□□□ 1.75
CUEDC1Q9NWM3 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUEDC1Q9NWM3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC25.98■■□□□ 1.75
CUEDC1Q9NWM3 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUEDC1Q9NWM3 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CUEDC1Q9NWM3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
CUEDC1Q9NWM3 AL161658.1-201ENST00000623641 1967 ntBASIC25.93■■□□□ 1.74
CUEDC1Q9NWM3 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUEDC1Q9NWM3 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUEDC1Q9NWM3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CUEDC1Q9NWM3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
CUEDC1Q9NWM3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CUEDC1Q9NWM3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CUEDC1Q9NWM3 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.91■■□□□ 1.74
CUEDC1Q9NWM3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.91■■□□□ 1.74
CUEDC1Q9NWM3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.9■■□□□ 1.74
CUEDC1Q9NWM3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.9■■□□□ 1.74
CUEDC1Q9NWM3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CUEDC1Q9NWM3 ST7-202ENST00000323984 2142 ntTSL 5 BASIC25.89■■□□□ 1.74
CUEDC1Q9NWM3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CUEDC1Q9NWM3 ST7-207ENST00000393449 2127 ntTSL 5 BASIC25.89■■□□□ 1.74
CUEDC1Q9NWM3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
CUEDC1Q9NWM3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.88■■□□□ 1.73
CUEDC1Q9NWM3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
CUEDC1Q9NWM3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CUEDC1Q9NWM3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
CUEDC1Q9NWM3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CUEDC1Q9NWM3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CUEDC1Q9NWM3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CUEDC1Q9NWM3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
CUEDC1Q9NWM3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CUEDC1Q9NWM3 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CUEDC1Q9NWM3 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CUEDC1Q9NWM3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.84■■□□□ 1.73
CUEDC1Q9NWM3 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
CUEDC1Q9NWM3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CUEDC1Q9NWM3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.81■■□□□ 1.72
CUEDC1Q9NWM3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CUEDC1Q9NWM3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CUEDC1Q9NWM3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.8■■□□□ 1.72
CUEDC1Q9NWM3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.8■■□□□ 1.72
CUEDC1Q9NWM3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CUEDC1Q9NWM3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CUEDC1Q9NWM3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CUEDC1Q9NWM3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CUEDC1Q9NWM3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CUEDC1Q9NWM3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.78■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms