Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CSMD3Q7Z407 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSMD3Q7Z407 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CSMD3Q7Z407 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSMD3Q7Z407 ZNRF2P2-203ENST00000454624 420 ntBASIC19.41■□□□□ 0.7
CSMD3Q7Z407 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CSMD3Q7Z407 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC19.41■□□□□ 0.7
CSMD3Q7Z407 BOD1-206ENST00000480951 814 ntTSL 2 BASIC19.41■□□□□ 0.7
CSMD3Q7Z407 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CSMD3Q7Z407 HSD17B1P1-201ENST00000590052 955 ntBASIC19.41■□□□□ 0.7
CSMD3Q7Z407 MIR639-201ENST00000384974 98 ntBASIC19.41■□□□□ 0.7
CSMD3Q7Z407 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC19.4■□□□□ 0.7
CSMD3Q7Z407 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC19.39■□□□□ 0.7
CSMD3Q7Z407 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CSMD3Q7Z407 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC19.39■□□□□ 0.69
CSMD3Q7Z407 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CSMD3Q7Z407 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.37■□□□□ 0.69
CSMD3Q7Z407 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSMD3Q7Z407 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC19.35■□□□□ 0.69
CSMD3Q7Z407 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSMD3Q7Z407 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSMD3Q7Z407 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC19.34■□□□□ 0.69
CSMD3Q7Z407 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSMD3Q7Z407 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CSMD3Q7Z407 MIR3648-2-201ENST00000581792 180 ntBASIC19.33■□□□□ 0.68
CSMD3Q7Z407 MIR3648-1-201ENST00000615959 180 ntBASIC19.33■□□□□ 0.68
CSMD3Q7Z407 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CSMD3Q7Z407 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSMD3Q7Z407 CR559946.2-201ENST00000623684 991 ntBASIC19.32■□□□□ 0.68
CSMD3Q7Z407 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
CSMD3Q7Z407 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.3■□□□□ 0.68
CSMD3Q7Z407 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC19.3■□□□□ 0.68
CSMD3Q7Z407 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSMD3Q7Z407 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSMD3Q7Z407 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSMD3Q7Z407 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSMD3Q7Z407 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.29■□□□□ 0.68
CSMD3Q7Z407 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC19.28■□□□□ 0.68
CSMD3Q7Z407 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CSMD3Q7Z407 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CSMD3Q7Z407 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSMD3Q7Z407 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CSMD3Q7Z407 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CSMD3Q7Z407 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CSMD3Q7Z407 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CSMD3Q7Z407 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CSMD3Q7Z407 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CSMD3Q7Z407 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CSMD3Q7Z407 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC19.26■□□□□ 0.67
CSMD3Q7Z407 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CSMD3Q7Z407 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC19.25■□□□□ 0.67
CSMD3Q7Z407 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CSMD3Q7Z407 AC021231.2-201ENST00000594613 730 ntBASIC19.25■□□□□ 0.67
CSMD3Q7Z407 CALM3-209ENST00000597743 577 ntTSL 4 BASIC19.25■□□□□ 0.67
CSMD3Q7Z407 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CSMD3Q7Z407 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC19.24■□□□□ 0.67
CSMD3Q7Z407 AC016575.1-201ENST00000607026 382 ntBASIC19.24■□□□□ 0.67
CSMD3Q7Z407 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CSMD3Q7Z407 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CSMD3Q7Z407 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CSMD3Q7Z407 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CSMD3Q7Z407 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CSMD3Q7Z407 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CSMD3Q7Z407 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CSMD3Q7Z407 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CSMD3Q7Z407 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.22■□□□□ 0.67
CSMD3Q7Z407 RNF166-209ENST00000567844 633 ntTSL 5 BASIC19.22■□□□□ 0.67
CSMD3Q7Z407 DUX4L29-201ENST00000425409 679 ntBASIC19.21■□□□□ 0.67
CSMD3Q7Z407 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CSMD3Q7Z407 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.2■□□□□ 0.66
CSMD3Q7Z407 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.19■□□□□ 0.66
CSMD3Q7Z407 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSMD3Q7Z407 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC19.17■□□□□ 0.66
CSMD3Q7Z407 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC19.17■□□□□ 0.66
CSMD3Q7Z407 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CSMD3Q7Z407 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC19.16■□□□□ 0.66
CSMD3Q7Z407 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CSMD3Q7Z407 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CSMD3Q7Z407 GDI1-215ENST00000630693 786 ntTSL 4 BASIC19.15■□□□□ 0.66
CSMD3Q7Z407 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CSMD3Q7Z407 RPS2-209ENST00000529806 993 ntTSL 3 BASIC19.15■□□□□ 0.66
CSMD3Q7Z407 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.14■□□□□ 0.66
CSMD3Q7Z407 WASH5P-204ENST00000632292 975 ntBASIC19.14■□□□□ 0.66
CSMD3Q7Z407 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CSMD3Q7Z407 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CSMD3Q7Z407 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CSMD3Q7Z407 AGPS-202ENST00000409888 815 ntTSL 4 BASIC19.12■□□□□ 0.65
CSMD3Q7Z407 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC19.11■□□□□ 0.65
CSMD3Q7Z407 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CSMD3Q7Z407 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CSMD3Q7Z407 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CSMD3Q7Z407 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CSMD3Q7Z407 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSMD3Q7Z407 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSMD3Q7Z407 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSMD3Q7Z407 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CSMD3Q7Z407 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC19.09■□□□□ 0.65
CSMD3Q7Z407 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.08■□□□□ 0.65
CSMD3Q7Z407 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CSMD3Q7Z407 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms