Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MIR3648-2-201ENST00000581792 180 ntBASIC20.64■□□□□ 0.89
PRKDCP78527 MIR3648-1-201ENST00000615959 180 ntBASIC20.64■□□□□ 0.89
PRKDCP78527 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC20.63■□□□□ 0.89
PRKDCP78527 CR559946.2-201ENST00000623684 991 ntBASIC20.63■□□□□ 0.89
PRKDCP78527 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PRKDCP78527 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.63■□□□□ 0.89
PRKDCP78527 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PRKDCP78527 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.61■□□□□ 0.89
PRKDCP78527 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PRKDCP78527 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.58■□□□□ 0.88
PRKDCP78527 AC016575.1-201ENST00000607026 382 ntBASIC20.58■□□□□ 0.88
PRKDCP78527 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PRKDCP78527 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRKDCP78527 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PRKDCP78527 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRKDCP78527 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.55■□□□□ 0.88
PRKDCP78527 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC20.55■□□□□ 0.88
PRKDCP78527 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRKDCP78527 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.55■□□□□ 0.88
PRKDCP78527 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PRKDCP78527 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRKDCP78527 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRKDCP78527 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.53■□□□□ 0.88
PRKDCP78527 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRKDCP78527 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.53■□□□□ 0.88
PRKDCP78527 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.53■□□□□ 0.88
PRKDCP78527 AC021231.2-201ENST00000594613 730 ntBASIC20.53■□□□□ 0.88
PRKDCP78527 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
PRKDCP78527 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PRKDCP78527 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PRKDCP78527 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PRKDCP78527 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PRKDCP78527 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.49■□□□□ 0.87
PRKDCP78527 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.48■□□□□ 0.87
PRKDCP78527 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
PRKDCP78527 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKDCP78527 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKDCP78527 RARRES2P2-201ENST00000394842 485 ntBASIC20.46■□□□□ 0.87
PRKDCP78527 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PRKDCP78527 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PRKDCP78527 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.43■□□□□ 0.86
PRKDCP78527 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.43■□□□□ 0.86
PRKDCP78527 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.42■□□□□ 0.86
PRKDCP78527 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PRKDCP78527 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.41■□□□□ 0.86
PRKDCP78527 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PRKDCP78527 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKDCP78527 DUX4L29-201ENST00000425409 679 ntBASIC20.41■□□□□ 0.86
PRKDCP78527 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PRKDCP78527 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.4■□□□□ 0.86
PRKDCP78527 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PRKDCP78527 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PRKDCP78527 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PRKDCP78527 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
PRKDCP78527 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PRKDCP78527 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PRKDCP78527 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.35■□□□□ 0.85
PRKDCP78527 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PRKDCP78527 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.35■□□□□ 0.85
PRKDCP78527 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PRKDCP78527 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRKDCP78527 ABHD17AP5-201ENST00000580133 923 ntBASIC20.31■□□□□ 0.84
PRKDCP78527 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PRKDCP78527 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PRKDCP78527 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRKDCP78527 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRKDCP78527 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PRKDCP78527 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
PRKDCP78527 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
PRKDCP78527 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.29■□□□□ 0.84
PRKDCP78527 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.28■□□□□ 0.84
PRKDCP78527 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PRKDCP78527 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PRKDCP78527 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.27■□□□□ 0.84
PRKDCP78527 LINC01971-201ENST00000617888 1048 ntBASIC20.27■□□□□ 0.84
PRKDCP78527 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PRKDCP78527 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.27■□□□□ 0.84
PRKDCP78527 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.26■□□□□ 0.83
PRKDCP78527 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PRKDCP78527 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PRKDCP78527 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
PRKDCP78527 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PRKDCP78527 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.25■□□□□ 0.83
PRKDCP78527 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PRKDCP78527 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.22■□□□□ 0.83
PRKDCP78527 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PRKDCP78527 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PRKDCP78527 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PRKDCP78527 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.21■□□□□ 0.83
PRKDCP78527 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.2■□□□□ 0.82
PRKDCP78527 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.2■□□□□ 0.82
PRKDCP78527 DUX4L11-201ENST00000611504 1267 ntBASIC20.2■□□□□ 0.82
PRKDCP78527 DUX4L12-201ENST00000614593 1267 ntBASIC20.2■□□□□ 0.82
PRKDCP78527 DUX4L14-201ENST00000621227 1267 ntBASIC20.2■□□□□ 0.82
PRKDCP78527 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PRKDCP78527 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.17■□□□□ 0.82
PRKDCP78527 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PRKDCP78527 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PRKDCP78527 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PRKDCP78527 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms